Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   OG311_RS21170 Genome accession   NZ_CP108362
Coordinates   4630945..4632348 (-) Length   467 a.a.
NCBI ID   WP_229337367.1    Uniprot ID   A0ABS8E7C9
Organism   Streptomyces sp. NBC_01343     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4625945..4637348
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG311_RS21145 (OG311_21175) - 4626211..4626783 (-) 573 WP_030867865.1 SigE family RNA polymerase sigma factor -
  OG311_RS21150 (OG311_21180) - 4626964..4627929 (-) 966 WP_327133044.1 A/G-specific adenine glycosylase -
  OG311_RS21155 (OG311_21185) - 4627952..4628575 (-) 624 WP_327133045.1 phosphatase PAP2 family protein -
  OG311_RS21160 (OG311_21190) - 4628745..4629530 (+) 786 WP_327135656.1 hypothetical protein -
  OG311_RS21165 (OG311_21195) disA 4629668..4630792 (-) 1125 WP_030158457.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  OG311_RS21170 (OG311_21200) radA/sms 4630945..4632348 (-) 1404 WP_229337367.1 DNA repair protein RadA Machinery gene
  OG311_RS21175 (OG311_21205) - 4632569..4634386 (+) 1818 WP_327133046.1 hypothetical protein -
  OG311_RS21180 (OG311_21210) - 4634407..4635246 (-) 840 WP_327133047.1 hypothetical protein -
  OG311_RS21185 (OG311_21215) - 4635310..4636239 (+) 930 WP_327133048.1 Ppx/GppA phosphatase family protein -
  OG311_RS21190 (OG311_21220) - 4636329..4637165 (+) 837 WP_229337360.1 sugar phosphate isomerase/epimerase -

Sequence

Protein


Download         Length: 467 a.a.        Molecular weight: 48761.94 Da        Isoelectric Point: 8.2598

>NTDB_id=659406 OG311_RS21170 WP_229337367.1 4630945..4632348(-) (radA/sms) [Streptomyces sp. NBC_01343]
MAARTSRSSAKDRPSYRCSECGYTTAKWLGRCPECQAWGTVEEMGGAPAVRTTAAGRVSAPALPIAQVDGRTATARSTGV
DELDRVLGGGLVPGAVVLLAGEPGVGKSTLLLDVAAKAASEAHRTLYVTGEESASQVRLRADRINALNDHLFLAAETDLS
AVLGHLDAVRPSLLILDSVQTVASPEIDGAPGGMAQVREVAGALIRASKERGMATLLVGHVTKDGAIAGPRLLEHLVDVV
LSFEGDRHARLRLVRGVKNRYGATDEVGCFELHDEGITGLADPSGLFLTRRAEAVPGTCLTVTLEGKRPLVAEVQALTVD
SQIPSPRRTTSGLETSRVSMMLAVLEQRGRITALGKRDIYSATVGGVKLTEPAADLAIALALASAASDVPLPKNLVAIGE
VGLAGEVRRVTGVQRRLAEAHRLGFTHALVPGDPGKVPAGMKVIEVADMGDALRVLPRGRSRAAAKE

Nucleotide


Download         Length: 1404 bp        

>NTDB_id=659406 OG311_RS21170 WP_229337367.1 4630945..4632348(-) (radA/sms) [Streptomyces sp. NBC_01343]
ATGGCTGCCCGTACATCTCGTTCATCCGCCAAGGACCGGCCGTCCTACCGCTGCTCCGAGTGCGGCTACACGACCGCGAA
ATGGCTCGGGCGGTGCCCCGAGTGCCAGGCGTGGGGCACCGTCGAGGAGATGGGCGGCGCGCCCGCCGTACGGACCACCG
CCGCCGGCCGGGTCTCCGCGCCCGCGCTCCCGATCGCGCAGGTCGACGGCCGGACGGCGACCGCCCGCAGCACCGGCGTG
GACGAGCTGGACCGGGTCCTCGGCGGCGGGCTCGTACCCGGCGCCGTCGTCCTGCTGGCCGGCGAGCCGGGCGTCGGCAA
GTCGACGCTGCTGCTCGACGTCGCGGCGAAGGCGGCGAGCGAAGCGCACCGCACCCTCTACGTCACGGGCGAGGAGTCGG
CGAGCCAGGTGCGGCTGCGGGCCGACCGGATCAACGCGCTCAACGACCACCTCTTCCTCGCCGCCGAGACCGATCTGTCC
GCCGTACTGGGCCACCTCGACGCCGTACGGCCCTCGCTGCTGATCCTGGACTCCGTACAGACCGTCGCCTCGCCCGAGAT
CGACGGCGCGCCCGGTGGCATGGCCCAGGTCCGCGAGGTGGCCGGGGCGCTGATCCGCGCCTCCAAGGAGCGCGGCATGG
CCACCCTCCTGGTCGGGCACGTCACCAAGGACGGGGCGATCGCCGGCCCCCGCCTGCTGGAGCACCTCGTCGACGTGGTC
CTCAGCTTCGAGGGCGACCGGCACGCGCGGCTGCGCCTCGTGCGCGGGGTGAAGAACCGGTACGGCGCCACCGACGAGGT
CGGCTGCTTCGAACTGCACGACGAGGGGATCACCGGGCTCGCCGACCCGAGCGGGCTGTTCCTGACCCGGCGCGCGGAGG
CCGTCCCCGGGACCTGCCTGACGGTGACCCTGGAGGGCAAGCGCCCGCTGGTCGCCGAGGTGCAGGCGCTGACCGTGGAC
TCGCAGATCCCCTCGCCCCGGCGGACCACCTCCGGCCTGGAGACCTCGCGCGTCTCGATGATGCTGGCCGTGCTGGAGCA
GCGCGGCCGGATCACCGCGCTCGGCAAGCGCGACATCTACTCCGCCACCGTGGGCGGGGTGAAGCTGACCGAGCCGGCCG
CCGACCTGGCGATCGCGCTCGCGCTGGCCTCGGCGGCGAGCGACGTCCCGCTGCCGAAGAACCTCGTGGCGATCGGCGAG
GTCGGGCTCGCGGGCGAGGTGCGGCGGGTGACGGGCGTACAGCGGCGGCTCGCCGAGGCGCACCGGCTCGGCTTCACGCA
CGCGCTGGTACCGGGCGATCCGGGGAAGGTCCCGGCCGGGATGAAGGTGATCGAGGTCGCGGACATGGGCGACGCCCTGC
GGGTGCTGCCGCGCGGGCGTTCGCGGGCGGCGGCCAAGGAGTAG

Domains

Predicted by InterProScan.

AAA domain (AAA_25)

(85-225)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(16-43)

Subunit ChlI of Mg-chelatase (ChlI)

(373-431)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

44.493

97.216

0.433
  radA Streptococcus mitis SK321

42.731

97.216

0.415
  radA Streptococcus mitis NCTC 12261

42.731

97.216

0.415
  radA Streptococcus pneumoniae TIGR4

42.794

96.574

0.413
  radA Streptococcus pneumoniae R6

42.794

96.574

0.413
  radA Streptococcus pneumoniae Rx1

42.794

96.574

0.413
  radA Streptococcus pneumoniae D39

42.794

96.574

0.413