Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   OG311_RS20355 Genome accession   NZ_CP108362
Coordinates   4446981..4447580 (+) Length   199 a.a.
NCBI ID   WP_030152816.1    Uniprot ID   A0A5J6J6A5
Organism   Streptomyces sp. NBC_01343     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4441981..4452580
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG311_RS20335 (OG311_20365) - 4442029..4444659 (+) 2631 WP_327132944.1 glycosyltransferase -
  OG311_RS20340 (OG311_20370) - 4444869..4445519 (+) 651 WP_229337614.1 hypothetical protein -
  OG311_RS20345 (OG311_20375) - 4445576..4446331 (-) 756 WP_229337612.1 SLATT domain-containing protein -
  OG311_RS20350 (OG311_20380) - 4446599..4446943 (+) 345 WP_078621772.1 YbaB/EbfC family nucleoid-associated protein -
  OG311_RS20355 (OG311_20385) recR 4446981..4447580 (+) 600 WP_030152816.1 recombination mediator RecR Machinery gene
  OG311_RS20360 (OG311_20390) - 4447573..4448247 (+) 675 WP_327132945.1 DUF5063 domain-containing protein -
  OG311_RS20365 (OG311_20395) - 4448322..4449242 (-) 921 WP_327132946.1 hypothetical protein -
  OG311_RS20370 (OG311_20400) - 4449475..4450749 (+) 1275 WP_030866284.1 aspartate kinase -
  OG311_RS20375 (OG311_20405) - 4450746..4451822 (+) 1077 WP_327132947.1 aspartate-semialdehyde dehydrogenase -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 21928.25 Da        Isoelectric Point: 5.0142

>NTDB_id=659401 OG311_RS20355 WP_030152816.1 4446981..4447580(+) (recR) [Streptomyces sp. NBC_01343]
MYEGVVQDLIDELGRLPGVGPKSAQRIAFHILQAEPTDVRRLAHALLEVKDKVRFCAVCGNVAQEERCNICRDPRRDTTV
ICVVEEPKDVVAIERTREFRGRYHVLGGAISPIEGVGPDDLRIRELLARLADGEVTELILATDPNLEGEATATYLARMIK
PMGLKVTRLASGLPVGGDLEYADEVTLGRAFEGRRLLDV

Nucleotide


Download         Length: 600 bp        

>NTDB_id=659401 OG311_RS20355 WP_030152816.1 4446981..4447580(+) (recR) [Streptomyces sp. NBC_01343]
GTGTACGAAGGCGTGGTCCAGGACCTGATCGACGAACTGGGCAGGCTGCCCGGCGTCGGGCCCAAGAGCGCGCAGCGGAT
CGCCTTCCACATCCTGCAGGCCGAGCCCACCGACGTCCGCCGCCTCGCGCACGCGCTGCTGGAGGTCAAGGACAAGGTCC
GGTTCTGCGCGGTGTGCGGGAACGTGGCGCAGGAGGAGCGGTGCAACATCTGCCGCGACCCGCGCCGCGACACCACGGTC
ATCTGTGTGGTGGAGGAGCCGAAGGACGTCGTCGCGATCGAGCGGACCCGCGAGTTCCGGGGCCGGTACCACGTCCTCGG
CGGCGCCATCAGCCCGATCGAGGGCGTCGGCCCGGACGACCTGCGCATCCGCGAGCTGCTGGCGCGCCTCGCGGACGGCG
AGGTGACCGAGCTGATCCTCGCCACCGACCCGAACCTGGAGGGCGAGGCGACCGCCACGTACCTCGCCCGCATGATCAAG
CCCATGGGCCTGAAGGTCACCCGCCTGGCCAGCGGGCTCCCCGTCGGGGGAGATCTGGAGTACGCGGACGAGGTCACGCT
CGGGCGGGCCTTTGAAGGAAGGCGACTTCTCGATGTCTGA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(38-77)

Toprim domain (Toprim_4)

(80-170)

Helix-hairpin-helix motif (HHH)

(2-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5J6J6A5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

55.612

98.492

0.548
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

54.639

97.487

0.533
  recR Streptococcus pneumoniae R6

48.454

97.487

0.472