Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapF   Type   Regulator
Locus tag   MKS87_RS20090 Genome accession   NZ_CP092631
Coordinates   3862636..3863781 (+) Length   381 a.a.
NCBI ID   WP_029318693.1    Uniprot ID   -
Organism   Bacillus subtilis strain YB-15     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 3857636..3868781
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MKS87_RS20070 (MKS87_20070) albF 3857652..3858932 (+) 1281 WP_003227558.1 pitrilysin family protein -
  MKS87_RS20075 (MKS87_20075) albG 3858929..3859630 (+) 702 WP_014481222.1 antilisterial bacteriocin subtilosin biosynthesis protein AlbG -
  MKS87_RS20080 (MKS87_20080) ywhL 3859636..3861012 (-) 1377 WP_197196294.1 YncE family protein -
  MKS87_RS20085 (MKS87_20085) ywhK 3861051..3862406 (-) 1356 WP_197196295.1 YncE family protein -
  MKS87_RS22070 - 3862403..3862633 (-) 231 WP_015714889.1 hypothetical protein -
  MKS87_RS20090 (MKS87_20090) rapF 3862636..3863781 (+) 1146 WP_029318693.1 response regulator aspartate phosphatase RapF Regulator
  MKS87_RS20095 (MKS87_20095) phrF 3863765..3863884 (+) 120 WP_009968329.1 phosphatase RapF inhibitor PhrF Regulator
  MKS87_RS20100 (MKS87_20100) - 3864137..3864616 (+) 480 WP_015714892.1 hypothetical protein -
  MKS87_RS20105 (MKS87_20105) - 3864765..3865553 (+) 789 WP_015714893.1 membrane protein -
  MKS87_RS20110 (MKS87_20110) - 3865540..3866214 (+) 675 WP_015714894.1 hypothetical protein -
  MKS87_RS20115 (MKS87_20115) - 3866224..3867021 (+) 798 WP_231573542.1 hypothetical protein -
  MKS87_RS20120 (MKS87_20120) - 3867024..3867671 (+) 648 WP_015714896.1 ABC transporter ATP-binding protein -
  MKS87_RS20125 (MKS87_20125) - 3867664..3868224 (+) 561 WP_015714897.1 hypothetical protein -

Sequence

Protein


Download         Length: 381 a.a.        Molecular weight: 45594.05 Da        Isoelectric Point: 5.0624

>NTDB_id=659392 MKS87_RS20090 WP_029318693.1 3862636..3863781(+) (rapF) [Bacillus subtilis strain YB-15]
MTGVISSSSIGEKINEWYMYIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPR
LSDLLLEIDKKQARLTGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFS
MDYARQAYEIYKENEAYNIRLLQCHSLFATNFLDLKQYEDAVSHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYED
AITYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKMDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAI
QGFFDFLESKMLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVRQLIQGGVSLYEIEV

Nucleotide


Download         Length: 1146 bp        

>NTDB_id=659392 MKS87_RS20090 WP_029318693.1 3862636..3863781(+) (rapF) [Bacillus subtilis strain YB-15]
GTGACAGGTGTCATATCTTCTTCTTCCATCGGAGAAAAGATTAACGAATGGTATATGTACATACGCCGATTTAGCATACC
CGATGCAGAATATTTGCGACGAGAAATCAAGCAAGAGCTGGATCAAATGGAAGAAGATCAAGACCTTCATTTGTACTATT
CACTGATGGAGTTTCGGCACAACCTAATGCTTGAGTACCTTGAACCGTTAGAAAAAATGAGGATTGAGGAACAGCCGAGA
CTGTCTGATCTGCTGCTTGAGATTGATAAAAAACAGGCTCGTTTAACTGGTCTGCTTGAGTACTATTTTAATTTCTTCAG
AGGCATGTATGAGCTGGACCAGCGGGAATATCTGTCGGCTATTAAATTTTTCAAAAAGGCCGAAAGCAAGCTGATATTCG
TTAAGGATCGGATAGAGAAAGCTGAGTTTTTCTTTAAGATGTCTGAATCTTATTACTATATGAAACAAACGTATTTTTCA
ATGGACTATGCACGGCAAGCATATGAAATATACAAAGAAAATGAAGCTTATAATATAAGATTGCTGCAGTGTCATTCTTT
ATTTGCCACCAATTTTTTAGATTTAAAACAGTATGAGGATGCCGTCTCACATTTTCAAAAAGCTTATTCTATGGCAGAAG
CTGAAAAGCAGCCCCAATTAATGGGAAGAACTTTGTACAATATCGGGCTTTGTAAAAACAGCCAAAGCCAATATGAGGAT
GCCATAACATATTTCAAAAGAGCAATAGCTGTTTTTGAAGAATCAAATATTCTTCCTTCCTTACCTCAAGCGTATTTTTT
AATTACACAGATCCATTATAAATTAGGAAAAATGGATAAAGCTCATGAATATCATAGTAAGGGAATGGCTTATTCACAAA
AGGCCGGAGATGTAATATATTTATCAGAGTTTGAATTTTTGAAATCTTTATACTTATCAGGCCCGGATGAAGAAGCAATT
CAAGGATTTTTTGATTTTCTCGAAAGTAAAATGTTGTATGCTGATCTTGAAGATTTCGCTATTGATGTGGCAAAATATTA
TCATGAACGTAAAAATTTTCAAAAAGCTTCTGCTTATTTTTTGAAGGTGGAACAAGTAAGGCAACTTATTCAAGGAGGAG
TGAGTTTGTATGAAATTGAAGTCTAA

Domains

Predicted by InterproScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(4-65)

Tetratricopeptide repeat (TPR_12)

(223-290)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapF Bacillus subtilis subsp. subtilis str. 168

98.95

100

0.99
  rapC Bacillus subtilis subsp. subtilis str. 168

57.368

99.738

0.572