Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   OG625_RS20730 Genome accession   NZ_CP108356
Coordinates   4490818..4491417 (+) Length   199 a.a.
NCBI ID   WP_329383114.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01351     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4485818..4496417
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG625_RS20705 (OG625_20745) - 4486305..4487666 (+) 1362 WP_329383101.1 aspartate aminotransferase family protein -
  OG625_RS20710 (OG625_20750) - 4487775..4488440 (+) 666 WP_329383103.1 GntR family transcriptional regulator -
  OG625_RS20715 (OG625_20755) - 4488579..4489229 (+) 651 WP_329383106.1 hypothetical protein -
  OG625_RS20720 (OG625_20760) - 4489387..4490133 (-) 747 WP_329383109.1 SLATT domain-containing protein -
  OG625_RS20725 (OG625_20765) - 4490401..4490745 (+) 345 WP_329383111.1 YbaB/EbfC family nucleoid-associated protein -
  OG625_RS20730 (OG625_20770) recR 4490818..4491417 (+) 600 WP_329383114.1 recombination mediator RecR Machinery gene
  OG625_RS20735 (OG625_20775) - 4491410..4492057 (+) 648 WP_329383116.1 DUF5063 domain-containing protein -
  OG625_RS20740 (OG625_20780) - 4492198..4493472 (+) 1275 WP_329383120.1 aspartate kinase -
  OG625_RS20745 (OG625_20785) - 4493469..4494542 (+) 1074 WP_329383122.1 aspartate-semialdehyde dehydrogenase -
  OG625_RS20750 (OG625_20790) - 4494788..4495498 (+) 711 WP_329390822.1 SigE family RNA polymerase sigma factor -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 21900.28 Da        Isoelectric Point: 5.1777

>NTDB_id=659318 OG625_RS20730 WP_329383114.1 4490818..4491417(+) (recR) [Streptomyces sp. NBC_01351]
MYEGVVQDLIDELGRLPGVGPKSAQRIAFHILQAEPTDVRRLAHALLEVKEKVRFCAVCGNVAQEERCNICRDPRRDLSV
ICVVEESKDVVAIERTREFRGRYHVLGGAISPIEGVGPDDLRIRELLARLADGVVTELILATDPNLEGEATATYLARMIK
PMGLKVTRLASGLPVGGDLEYADEVTLGRAFEGRRLLDV

Nucleotide


Download         Length: 600 bp        

>NTDB_id=659318 OG625_RS20730 WP_329383114.1 4490818..4491417(+) (recR) [Streptomyces sp. NBC_01351]
TTGTACGAAGGCGTGGTCCAGGACCTGATCGACGAACTGGGCAGGCTGCCCGGCGTCGGGCCCAAGAGCGCGCAGCGGAT
CGCCTTCCACATCCTGCAGGCCGAGCCCACCGACGTCCGCCGCCTCGCGCACGCGCTGCTGGAGGTCAAGGAGAAGGTCC
GGTTCTGCGCGGTGTGCGGGAACGTGGCGCAGGAGGAGCGGTGCAACATCTGCCGTGACCCGCGCCGCGACCTGTCCGTC
ATCTGTGTCGTCGAGGAGTCGAAGGACGTCGTCGCGATCGAGCGGACCCGTGAGTTCCGGGGCCGGTACCACGTCCTCGG
CGGCGCGATCAGCCCGATCGAGGGCGTCGGCCCGGACGACCTGCGGATCCGTGAGCTGCTGGCACGCCTGGCGGACGGCG
TGGTGACCGAGCTGATCCTCGCCACCGACCCGAACCTGGAGGGCGAGGCGACCGCCACCTACCTCGCCCGCATGATCAAG
CCCATGGGCCTGAAGGTCACCCGCCTGGCCAGCGGGCTCCCCGTCGGGGGAGATCTGGAGTACGCGGACGAGGTCACGCT
CGGGCGGGCCTTTGAAGGAAGGCGACTTCTCGATGTCTGA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(38-77)

Toprim domain (Toprim_4)

(79-170)

Helix-hairpin-helix motif (HHH)

(2-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

55.612

98.492

0.548
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

54.124

97.487

0.528
  recR Streptococcus pneumoniae R6

47.938

97.487

0.467