Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ATS73_RS00390 Genome accession   NZ_CP092598
Coordinates   96603..97304 (+) Length   233 a.a.
NCBI ID   WP_058428258.1    Uniprot ID   -
Organism   Pseudoalteromonas sp. H100     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 91603..102304
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ATS73_RS00380 (ATS73_000380) uvrA 92233..95052 (-) 2820 WP_008131688.1 excinuclease ABC subunit UvrA -
  ATS73_RS00385 (ATS73_000385) - 95214..96582 (+) 1369 Protein_73 MFS transporter -
  ATS73_RS00390 (ATS73_000390) ssb 96603..97304 (+) 702 WP_058428258.1 single-stranded DNA-binding protein Machinery gene
  ATS73_RS00395 (ATS73_000395) - 97577..99205 (+) 1629 WP_058428259.1 EAL domain-containing protein -
  ATS73_RS00400 (ATS73_000400) - 99267..100175 (-) 909 WP_058428260.1 pyridoxal-phosphate dependent enzyme -
  ATS73_RS00405 (ATS73_000405) - 100351..100830 (+) 480 WP_306290772.1 type II secretion system protein -

Sequence

Protein


Download         Length: 233 a.a.        Molecular weight: 25078.25 Da        Isoelectric Point: 4.9264

>NTDB_id=659222 ATS73_RS00390 WP_058428258.1 96603..97304(+) (ssb) [Pseudoalteromonas sp. H100]
MARGVNKVILVGNLGQDPEVRYMPNGNGVANITLATSDSYKDKNTGQMVDKTEWHRVVFFGKLAEIVGEYCRKGSQIYVE
GKLQTRKWTDQQGQEKYTTEIVVDGFTGQMQMLGARGGDQQSGGGYQGNQGGQQNSGYQGNQGSQQGGYSQNNQNQQGNY
APQQQAAPAAQPQSAPAPQQNNQYQPQGGGFAPQQNSAPQQQGGFAPKPQNAPQGGASNPMEPTIDFDDDIPF

Nucleotide


Download         Length: 702 bp        

>NTDB_id=659222 ATS73_RS00390 WP_058428258.1 96603..97304(+) (ssb) [Pseudoalteromonas sp. H100]
ATGGCACGCGGTGTGAACAAAGTAATTTTGGTTGGTAATTTAGGGCAAGATCCTGAAGTTCGTTACATGCCTAACGGTAA
CGGTGTAGCAAATATTACCTTAGCAACTTCAGACAGCTATAAAGATAAAAACACTGGCCAAATGGTTGATAAAACTGAAT
GGCACCGTGTTGTATTTTTTGGGAAACTGGCTGAAATTGTAGGCGAATATTGTCGTAAAGGTTCACAAATATACGTAGAA
GGTAAACTTCAAACACGTAAATGGACTGATCAACAAGGCCAAGAAAAATACACCACAGAAATCGTTGTTGATGGCTTTAC
AGGTCAAATGCAAATGCTAGGTGCTCGCGGTGGAGACCAGCAAAGTGGTGGCGGTTACCAAGGCAATCAAGGTGGCCAGC
AAAACAGTGGTTATCAAGGTAATCAAGGTAGCCAACAAGGCGGTTATTCACAAAATAATCAAAACCAGCAAGGTAATTAT
GCACCACAGCAGCAAGCTGCACCTGCTGCACAGCCTCAATCGGCGCCTGCACCACAGCAAAATAACCAGTATCAGCCACA
AGGCGGTGGTTTTGCTCCACAGCAAAATAGTGCACCACAGCAGCAAGGTGGTTTTGCACCTAAGCCTCAAAATGCACCAC
AAGGCGGCGCATCAAATCCAATGGAACCAACAATAGATTTTGACGACGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

48.707

99.571

0.485
  ssb Glaesserella parasuis strain SC1401

52.299

74.678

0.391