Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   OG252_RS24100 Genome accession   NZ_CP108354
Coordinates   5200752..5201351 (-) Length   199 a.a.
NCBI ID   WP_266436168.1    Uniprot ID   A0ABP7RVS8
Organism   Streptomyces sp. NBC_01352     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5195752..5206351
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG252_RS24070 (OG252_24075) - 5196564..5196824 (-) 261 WP_266436158.1 DUF397 domain-containing protein -
  OG252_RS24075 (OG252_24080) - 5196821..5197570 (-) 750 WP_266448258.1 helix-turn-helix transcriptional regulator -
  OG252_RS24080 (OG252_24085) - 5197712..5198131 (+) 420 WP_329338592.1 hypothetical protein -
  OG252_RS24085 (OG252_24090) - 5198106..5198519 (-) 414 WP_266436162.1 SsgA family sporulation/cell division regulator -
  OG252_RS24090 (OG252_24095) - 5198642..5200084 (+) 1443 WP_266436164.1 sigma-70 family RNA polymerase sigma factor -
  OG252_RS24095 (OG252_24100) - 5200100..5200759 (-) 660 WP_266436166.1 DUF5063 domain-containing protein -
  OG252_RS24100 (OG252_24105) recR 5200752..5201351 (-) 600 WP_266436168.1 recombination mediator RecR Machinery gene
  OG252_RS24105 (OG252_24110) - 5201472..5201816 (-) 345 WP_078936353.1 YbaB/EbfC family nucleoid-associated protein -
  OG252_RS24110 (OG252_24115) - 5202098..5202847 (+) 750 WP_266436176.1 SLATT domain-containing protein -
  OG252_RS24115 (OG252_24120) - 5203029..5204564 (-) 1536 WP_329338599.1 substrate-binding domain-containing protein -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 21872.30 Da        Isoelectric Point: 4.9908

>NTDB_id=659215 OG252_RS24100 WP_266436168.1 5200752..5201351(-) (recR) [Streptomyces sp. NBC_01352]
MYEGVVQDLIDELGRLPGVGPKSAQRIAFHILQAEPTDVRRLAQCLMEVKAKVRFCATCGNVAQEELCNICRDTRRDLTV
ICVVEEPKDVVAIERTREFRGKYHVLGGAISPIEGVGPDDLRIRELLARLADGTVTELILATDPNLEGEATATYLARMIK
PMGLRVTRLASGLPVGGDLEYADEVTLGRAFEGRRLLDV

Nucleotide


Download         Length: 600 bp        

>NTDB_id=659215 OG252_RS24100 WP_266436168.1 5200752..5201351(-) (recR) [Streptomyces sp. NBC_01352]
TTGTACGAAGGCGTGGTCCAGGACCTCATCGACGAACTGGGGCGGCTCCCCGGCGTCGGTCCCAAGAGCGCGCAGCGGAT
CGCCTTCCACATCCTCCAGGCGGAACCGACGGACGTACGGCGCCTCGCGCAGTGCCTGATGGAGGTCAAGGCGAAGGTCC
GCTTCTGCGCGACCTGCGGCAACGTGGCACAGGAGGAACTGTGCAACATCTGCCGCGACACCCGCCGCGACCTGACCGTC
ATCTGCGTGGTCGAGGAGCCGAAGGACGTGGTGGCGATCGAGCGCACCCGCGAGTTCCGGGGCAAGTACCACGTCCTGGG
CGGCGCGATCAGCCCGATCGAGGGGGTCGGCCCCGACGACCTGCGGATCAGGGAACTCCTGGCCCGTCTCGCCGACGGCA
CGGTCACCGAGCTGATTCTCGCCACGGACCCGAATCTCGAAGGCGAGGCGACGGCCACGTACCTCGCCCGCATGATCAAG
CCCATGGGCCTCAGGGTCACCCGCCTGGCCAGCGGCCTCCCGGTGGGTGGCGACCTGGAATACGCGGACGAGGTGACTCT
CGGCCGCGCCTTCGAGGGGAGACGACTCCTAGATGTCTGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH)

(2-27)

Toprim domain (Toprim_4)

(80-170)

RecR protein (RecR_ZnF)

(38-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

54.592

98.492

0.538
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

53.093

97.487

0.518
  recR Streptococcus pneumoniae R6

46.392

97.487

0.452