Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   OG252_RS23140 Genome accession   NZ_CP108354
Coordinates   4997272..4998681 (+) Length   469 a.a.
NCBI ID   WP_266435701.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01352     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4992272..5003681
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG252_RS23120 (OG252_23125) - 4992414..4993238 (-) 825 WP_266435691.1 sugar phosphate isomerase/epimerase -
  OG252_RS23125 (OG252_23130) - 4993390..4994322 (-) 933 WP_266435693.1 Ppx/GppA phosphatase family protein -
  OG252_RS23130 (OG252_23135) - 4994430..4995296 (+) 867 WP_329338362.1 hypothetical protein -
  OG252_RS23135 (OG252_23140) - 4995300..4997042 (-) 1743 WP_329338364.1 hypothetical protein -
  OG252_RS23140 (OG252_23145) radA 4997272..4998681 (+) 1410 WP_266435701.1 DNA repair protein RadA Machinery gene
  OG252_RS23145 (OG252_23150) disA 4998762..4999886 (+) 1125 WP_030043389.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  OG252_RS23150 (OG252_23155) - 4999950..5000795 (-) 846 WP_266435707.1 hypothetical protein -
  OG252_RS23155 (OG252_23160) - 5001200..5001853 (-) 654 WP_329338368.1 histidine kinase -
  OG252_RS23160 (OG252_23165) - 5001986..5002885 (+) 900 WP_266448217.1 A/G-specific adenine glycosylase -
  OG252_RS23165 (OG252_23170) - 5003111..5003659 (+) 549 WP_266435710.1 SigE family RNA polymerase sigma factor -

Sequence

Protein


Download         Length: 469 a.a.        Molecular weight: 49755.89 Da        Isoelectric Point: 8.0022

>NTDB_id=659209 OG252_RS23140 WP_266435701.1 4997272..4998681(+) (radA) [Streptomyces sp. NBC_01352]
MAARTKSAKERPSYRCTECGWQTAKWLGRCPECQAWGTIEEYGAPAVRTTAPGRVTTSAVPIGQVDGRQATARSTGVPEL
DRVLGGGLVPGAVVLVAGEPGVGKSTLLLDVAAKSASDEHRTLYVTGEESASQVRLRADRIKAIDDHLYLAAETDLSAVL
GHLDAVKPSLLILDSVQTVASPEIDGAPGGMSQVREVAGALIRVSKERGMSTLLVGHVTKDGAIAGPRLLEHLVDVVLSF
EGDRHARLRLVRGVKNRYGTTDEVGCFELHDEGITGLADPSGLFLTRRAEPVPGTCLTVTLEGRRPLVAEVQALTVDSQI
PSPRRTTSGLETSRVSMMLAVLEQRGRISALGKRDIYSATVGGVKLSEPAADLAIALALASAASDTPLPKNLVAIGEVGL
AGEVRRVTGVQRRLSEAHRLGFTHALVPGDPGKVPPGMKVLEVADIGDALRVLPRSRRREAPRDEEERR

Nucleotide


Download         Length: 1410 bp        

>NTDB_id=659209 OG252_RS23140 WP_266435701.1 4997272..4998681(+) (radA) [Streptomyces sp. NBC_01352]
ATGGCTGCCCGTACGAAGTCCGCCAAGGAGCGTCCGTCCTACCGCTGCACCGAGTGCGGCTGGCAGACGGCCAAGTGGCT
CGGCCGCTGCCCCGAGTGCCAGGCCTGGGGGACGATCGAGGAGTACGGCGCGCCCGCGGTCCGTACGACGGCTCCGGGCC
GCGTCACCACGTCCGCCGTGCCCATCGGCCAGGTCGACGGCCGGCAGGCCACCGCCCGCTCCACCGGCGTGCCCGAGCTG
GACCGGGTGCTCGGCGGCGGTCTGGTGCCCGGCGCGGTGGTCCTGGTCGCGGGCGAACCCGGCGTCGGCAAGTCGACGCT
GCTGCTCGACGTGGCGGCCAAGTCGGCGAGCGACGAGCACCGCACCCTCTATGTGACCGGCGAGGAGTCGGCGAGCCAGG
TCCGGTTGCGCGCCGACCGCATCAAGGCCATCGACGACCACCTGTATCTCGCCGCCGAGACCGATCTGTCCGCGGTGCTC
GGCCACTTGGACGCGGTGAAGCCGTCCCTGCTGATCCTCGACTCGGTGCAGACGGTGGCCTCCCCGGAGATCGACGGCGC
CCCCGGCGGCATGTCCCAGGTGCGCGAGGTGGCGGGCGCCCTGATCCGCGTGTCCAAGGAGCGCGGCATGTCCACCCTCC
TTGTGGGCCATGTCACCAAGGACGGCGCGATCGCCGGCCCGCGCCTGCTGGAGCACCTGGTGGACGTCGTGCTGAGTTTC
GAGGGCGACCGGCACGCGCGCCTGCGTCTCGTACGAGGCGTCAAGAACCGCTACGGCACCACGGACGAGGTGGGCTGCTT
CGAGCTGCACGACGAGGGCATCACAGGCCTCGCCGACCCGAGCGGCCTGTTCCTGACCCGCCGGGCCGAGCCGGTGCCCG
GCACCTGCCTGACCGTCACCCTGGAGGGCCGCCGCCCGCTGGTCGCCGAGGTCCAGGCGCTCACCGTCGACTCGCAGATC
CCCTCCCCCAGGCGGACCACGTCCGGTCTGGAGACCTCCCGCGTCTCGATGATGCTGGCCGTCCTGGAACAGCGCGGCCG
GATCAGCGCCCTGGGCAAGCGGGACATCTACTCCGCGACGGTCGGCGGTGTGAAGTTGTCGGAGCCCGCCGCGGACCTCG
CCATCGCCCTCGCCCTGGCCTCCGCGGCCAGTGACACCCCGCTCCCCAAGAACCTCGTCGCGATCGGCGAAGTCGGCCTC
GCGGGCGAGGTCAGACGGGTCACGGGCGTGCAGCGCCGGCTCTCCGAAGCACACCGCCTGGGCTTCACGCACGCGCTCGT
TCCGGGCGATCCGGGCAAGGTCCCGCCCGGCATGAAGGTCCTGGAAGTAGCGGACATAGGGGACGCCCTGAGGGTCCTTC
CACGCTCGCGTCGGCGAGAGGCCCCACGGGACGAGGAGGAGCGCCGGTAG

Domains

Predicted by InterProScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(14-41)

Subunit ChlI of Mg-chelatase (ChlI)

(369-428)

AAA domain (AAA_25)

(78-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis NCTC 12261

43.778

95.949

0.42
  radA Streptococcus mitis SK321

43.778

95.949

0.42
  radA/sms Bacillus subtilis subsp. subtilis str. 168

43.267

96.588

0.418
  radA Streptococcus pneumoniae TIGR4

43.333

95.949

0.416
  radA Streptococcus pneumoniae D39

43.333

95.949

0.416
  radA Streptococcus pneumoniae Rx1

43.333

95.949

0.416
  radA Streptococcus pneumoniae R6

43.333

95.949

0.416