Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   MKI52_RS10465 Genome accession   NZ_CP092581
Coordinates   2106884..2107279 (-) Length   131 a.a.
NCBI ID   WP_000932695.1    Uniprot ID   -
Organism   Staphylococcus aureus strain VRMSSA-WC111     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2101884..2112279
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MKI52_RS10440 (MKI52_002068) thiE 2102483..2103124 (-) 642 WP_000483153.1 thiamine phosphate synthase -
  MKI52_RS10445 (MKI52_002069) thiM 2103126..2103917 (-) 792 WP_001108483.1 hydroxyethylthiazole kinase -
  MKI52_RS10450 (MKI52_002070) thiD 2103901..2104731 (-) 831 WP_000594954.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  MKI52_RS10455 (MKI52_002071) tenA 2104724..2105413 (-) 690 WP_000396077.1 thiaminase II -
  MKI52_RS10460 (MKI52_002072) sceD 2105800..2106495 (-) 696 WP_000752005.1 lytic transglycosylase SceD -
  MKI52_RS10465 (MKI52_002073) ssb 2106884..2107279 (-) 396 WP_000932695.1 single-stranded DNA-binding protein Machinery gene
  MKI52_RS10470 (MKI52_002074) - 2107473..2107913 (+) 441 WP_000846746.1 YwpF-like family protein -
  MKI52_RS10475 (MKI52_002075) fabZ 2107972..2108412 (-) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  MKI52_RS10480 (MKI52_002076) murA 2108446..2109711 (-) 1266 WP_000358006.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  MKI52_RS10485 (MKI52_002077) - 2109822..2110055 (-) 234 WP_000384523.1 DUF1146 family protein -
  MKI52_RS10490 (MKI52_002078) - 2110187..2110279 (-) 93 WP_001790611.1 hypothetical protein -
  MKI52_RS10495 (MKI52_002079) - 2110617..2111021 (-) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15056.12 Da        Isoelectric Point: 5.6875

>NTDB_id=659161 MKI52_RS10465 WP_000932695.1 2106884..2107279(-) (ssb) [Staphylococcus aureus strain VRMSSA-WC111]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIESQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=659161 MKI52_RS10465 WP_000932695.1 2106884..2107279(-) (ssb) [Staphylococcus aureus strain VRMSSA-WC111]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATATACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGAGTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

99.237

100

0.992
  ssb Staphylococcus aureus MW2

98.473

100

0.985