Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   MKI52_RS04505 Genome accession   NZ_CP092581
Coordinates   933187..934173 (+) Length   328 a.a.
NCBI ID   WP_000959283.1    Uniprot ID   -
Organism   Staphylococcus aureus strain VRMSSA-WC111     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 928187..939173
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MKI52_RS04480 (MKI52_000887) opp4B 928401..929363 (+) 963 WP_000915997.1 oligopeptide ABC transporter permease -
  MKI52_RS04485 (MKI52_000888) opp4C 929375..930256 (+) 882 WP_001180280.1 oligopeptide ABC transporter permease -
  MKI52_RS04490 (MKI52_000889) trpS 930298..931287 (-) 990 WP_000448934.1 tryptophan--tRNA ligase -
  MKI52_RS04495 (MKI52_000890) spxA 931581..931976 (+) 396 WP_000258003.1 transcriptional regulator SpxA -
  MKI52_RS04500 (MKI52_000891) mecA 932347..933066 (+) 720 WP_001217728.1 adaptor protein MecA -
  MKI52_RS04505 (MKI52_000892) coiA 933187..934173 (+) 987 WP_000959283.1 competence protein CoiA family protein Machinery gene
  MKI52_RS04510 (MKI52_000893) pepF 934221..936029 (+) 1809 WP_000082725.1 oligoendopeptidase F -
  MKI52_RS04515 (MKI52_000894) yjbH 936489..937295 (-) 807 WP_000896697.1 protease adaptor protein YjbH -
  MKI52_RS04520 (MKI52_000895) - 937318..937683 (-) 366 WP_000214070.1 truncated hemoglobin YjbI -
  MKI52_RS04525 (MKI52_000896) - 937787..938380 (-) 594 WP_000224619.1 CYTH domain-containing protein -
  MKI52_RS04530 (MKI52_000897) - 938566..938913 (+) 348 WP_001242103.1 hypothetical protein -

Sequence

Protein


Download         Length: 328 a.a.        Molecular weight: 38904.58 Da        Isoelectric Point: 9.5554

>NTDB_id=659136 MKI52_RS04505 WP_000959283.1 933187..934173(+) (coiA) [Staphylococcus aureus strain VRMSSA-WC111]
MLVALNEEKERVLATTALRKTQYFCPVCGKQVILKRGLKVISHFAHKHLAEQKCFNNETIKHYKSKLILAQMIQQQGCKV
EIEPFLKEIKQIPDILINNKYVIELQYSPIPYKQILQRTEGLKKMGYKVSWLLNDVDYCHNKVKFNHFHSLFINPITRKL
HTFNLEKKQIMMFQQIQYLGGYKYVAEKRNAKIIELFNEAPCDYHAVYKLSKFAINQYIKYCRWQNSVLEPTLSAMYQLQ
LTDQEVVYNYGYIFPEQIYIENHPIEWQLQVDLWLKNGKSKLVNDNLNYFKLKKFIVALESKTAIIEKLINNYLNICSDR
GNDVQILF

Nucleotide


Download         Length: 987 bp        

>NTDB_id=659136 MKI52_RS04505 WP_000959283.1 933187..934173(+) (coiA) [Staphylococcus aureus strain VRMSSA-WC111]
ATGTTAGTAGCTTTAAATGAAGAAAAGGAACGTGTGTTAGCAACTACTGCATTGAGAAAGACACAATATTTTTGTCCTGT
GTGTGGCAAGCAAGTTATTTTAAAGCGTGGGCTCAAAGTAATTAGTCATTTTGCACATAAACATTTAGCGGAACAAAAAT
GTTTTAATAATGAAACGATTAAACATTATAAAAGTAAATTGATTTTAGCACAGATGATACAGCAACAAGGATGTAAAGTA
GAGATAGAGCCATTTTTAAAAGAAATAAAACAAATTCCGGATATTTTGATTAATAATAAATATGTTATTGAGCTACAGTA
TTCGCCAATTCCTTATAAACAGATTCTTCAACGAACGGAAGGTTTAAAGAAAATGGGATATAAAGTAAGTTGGTTATTAA
ATGATGTTGATTATTGTCATAATAAAGTGAAGTTCAATCATTTTCATAGTTTGTTTATTAATCCAATCACTCGAAAACTT
CATACGTTCAATTTAGAGAAAAAACAAATAATGATGTTTCAACAAATACAATATTTAGGCGGGTACAAATATGTCGCTGA
AAAAAGGAATGCCAAAATTATTGAGTTGTTTAATGAGGCGCCTTGTGATTATCATGCTGTTTATAAATTATCAAAGTTCG
CAATTAATCAATATATCAAATATTGTCGCTGGCAAAATTCTGTTTTAGAACCCACTTTAAGTGCAATGTATCAATTACAG
TTAACTGATCAAGAAGTAGTGTACAATTATGGTTATATTTTTCCAGAGCAAATTTATATTGAAAATCATCCAATTGAGTG
GCAATTACAAGTTGATTTATGGTTAAAGAATGGAAAAAGCAAATTAGTAAATGACAATCTTAATTATTTTAAACTGAAAA
AATTTATTGTTGCTCTAGAAAGTAAAACAGCAATTATAGAAAAACTTATTAACAATTATTTAAATATTTGTTCAGATAGA
GGTAATGACGTGCAAATTTTGTTCTAA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(6-308)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Staphylococcus aureus N315

99.695

100

0.997
  coiA Staphylococcus aureus MW2

97.256

100

0.973