Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   OHA58_RS16355 Genome accession   NZ_CP108312
Coordinates   3639372..3639971 (-) Length   199 a.a.
NCBI ID   WP_100596382.1    Uniprot ID   A0ABV4SGR8
Organism   Streptomyces sp. NBC_00009     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3634372..3644971
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHA58_RS16335 (OHA58_16365) - 3635066..3635734 (-) 669 WP_116511753.1 SigE family RNA polymerase sigma factor -
  OHA58_RS16340 (OHA58_16370) - 3636092..3637159 (-) 1068 WP_405479438.1 aspartate-semialdehyde dehydrogenase -
  OHA58_RS16345 (OHA58_16375) - 3637159..3638439 (-) 1281 WP_405479440.1 aspartate kinase -
  OHA58_RS16350 (OHA58_16380) - 3638720..3639379 (-) 660 WP_405479441.1 DUF5063 domain-containing protein -
  OHA58_RS16355 (OHA58_16385) recR 3639372..3639971 (-) 600 WP_100596382.1 recombination mediator RecR Machinery gene
  OHA58_RS16360 (OHA58_16390) - 3640062..3640403 (-) 342 WP_405479443.1 YbaB/EbfC family nucleoid-associated protein -
  OHA58_RS16365 (OHA58_16395) - 3640672..3641433 (+) 762 WP_405479444.1 SLATT domain-containing protein -
  OHA58_RS16370 (OHA58_16400) - 3641444..3641953 (-) 510 WP_405479445.1 GNAT family N-acetyltransferase -
  OHA58_RS16375 (OHA58_16405) - 3641965..3642615 (-) 651 WP_266672704.1 hypothetical protein -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 21794.21 Da        Isoelectric Point: 4.9909

>NTDB_id=658749 OHA58_RS16355 WP_100596382.1 3639372..3639971(-) (recR) [Streptomyces sp. NBC_00009]
MYEGVVQDLIDELGRLPGVGPKSAQRIAFHILQAEPTDVRRLAQALMEVKAKVRFCATCGNVAQEELCNICRDPRRDLTV
ICVVEEPKDVVAVERTREFRGKYHVLGGAISPIEGVGPDDLRIRELLARLADGTVTELILATDPNLEGEATATYLARMIK
PMGLKVTRLASGLPVGGDLEYADEVTLGRAFEGRRLLDV

Nucleotide


Download         Length: 600 bp        

>NTDB_id=658749 OHA58_RS16355 WP_100596382.1 3639372..3639971(-) (recR) [Streptomyces sp. NBC_00009]
GTGTACGAAGGCGTGGTCCAGGACCTCATCGATGAGCTCGGCAGGCTGCCGGGCGTCGGTCCCAAGAGCGCGCAGCGGAT
CGCCTTCCACATCCTGCAGGCGGAGCCGACGGACGTACGGCGTCTCGCGCAGGCCCTGATGGAGGTCAAGGCGAAGGTCC
GCTTCTGCGCGACCTGCGGCAATGTGGCGCAGGAGGAGCTGTGCAACATCTGCCGCGACCCGCGCCGCGACCTGACGGTG
ATCTGCGTCGTCGAGGAGCCCAAGGACGTCGTCGCGGTCGAGCGGACCCGAGAGTTCCGGGGCAAGTACCACGTGCTCGG
CGGGGCGATCAGCCCCATCGAGGGCGTCGGCCCGGACGACCTGCGGATAAGGGAACTCCTCGCCCGCCTCGCCGACGGCA
CGGTCACCGAGCTGATCCTGGCCACGGACCCGAACCTGGAGGGCGAGGCCACGGCGACGTACCTCGCCCGCATGATCAAG
CCGATGGGCCTCAAGGTCACCCGCCTGGCCAGCGGGCTCCCGGTGGGGGGCGACCTGGAATACGCGGACGAGGTCACCCT
CGGCCGCGCCTTCGAGGGGAGACGACTCCTAGATGTCTGA

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(80-170)

Helix-hairpin-helix motif (HHH)

(2-27)

RecR protein (RecR_ZnF)

(38-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

55.102

98.492

0.543
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

54.124

97.487

0.528
  recR Streptococcus pneumoniae R6

47.423

97.487

0.462