Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   OHA58_RS15285 Genome accession   NZ_CP108312
Coordinates   3424706..3426115 (+) Length   469 a.a.
NCBI ID   WP_405479193.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00009     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3419706..3431115
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHA58_RS15265 (OHA58_15285) - 3419729..3420553 (-) 825 WP_405479186.1 sugar phosphate isomerase/epimerase family protein -
  OHA58_RS15270 (OHA58_15290) - 3420745..3421677 (-) 933 WP_405479188.1 Ppx/GppA family phosphatase -
  OHA58_RS15275 (OHA58_15295) - 3421749..3422678 (+) 930 WP_405479190.1 hypothetical protein -
  OHA58_RS15280 (OHA58_15300) - 3422710..3424428 (-) 1719 WP_405479191.1 BACON domain-containing protein -
  OHA58_RS15285 (OHA58_15305) radA/sms 3424706..3426115 (+) 1410 WP_405479193.1 DNA repair protein RadA Machinery gene
  OHA58_RS15290 (OHA58_15310) disA 3426228..3427352 (+) 1125 WP_127832608.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  OHA58_RS15295 (OHA58_15315) - 3427797..3428597 (-) 801 WP_405479195.1 hypothetical protein -
  OHA58_RS15300 (OHA58_15320) - 3428783..3429424 (+) 642 WP_405479197.1 phosphatase PAP2 family protein -
  OHA58_RS15305 (OHA58_15325) - 3429425..3429724 (-) 300 Protein_3039 response regulator transcription factor -
  OHA58_RS15310 (OHA58_15330) - 3429855..3429929 (-) 75 Protein_3040 hypothetical protein -
  OHA58_RS15315 (OHA58_15335) - 3429902..3430300 (-) 399 WP_405479198.1 hypothetical protein -

Sequence

Protein


Download         Length: 469 a.a.        Molecular weight: 49627.77 Da        Isoelectric Point: 8.2557

>NTDB_id=658744 OHA58_RS15285 WP_405479193.1 3424706..3426115(+) (radA/sms) [Streptomyces sp. NBC_00009]
MAARTKSGKDRPSYRCTECGWQTAKWLGRCGECQAWGTVEEYGAPAVRTTAPGRVTTSAVPIGQVDARQATARSTGVPEL
DRVLGGGLVPGAVVLVAGEPGVGKSTLLLDVAAKAASDEHRTLYVTGEESASQVRMRADRIKAIDDHLYLAAETDLSAVL
GHLDAVKPSLLIMDSVQTVASPEIDGAPGGMAQVREVAGALIRASKERGMATLLVGHVTKDGAIAGPRLLEHLVDVVLSF
EGDRHARLRLVRGVKNRYGTTDEVGCFELHDEGITGLADPSGLFLTRRAEPVPGTCLTVTLEGRRPLVAEVQALTVDSQI
PSPRRTTSGLETSRVSMMLAVLEQRGRISALGKRDIYSATVGGVKLSEPAADLAIALALASAASDTPLPKNLVAIGEVGL
AGEVRRVTGVQRRLAEAHRLGFTHALVPSDPGKVPAGMKVTEVADMGDALRVLPRSRRREAPRETEERR

Nucleotide


Download         Length: 1410 bp        

>NTDB_id=658744 OHA58_RS15285 WP_405479193.1 3424706..3426115(+) (radA/sms) [Streptomyces sp. NBC_00009]
ATGGCTGCCCGTACGAAATCCGGCAAAGACCGGCCGTCCTACCGCTGCACCGAGTGCGGCTGGCAGACGGCGAAATGGCT
GGGTCGCTGCGGCGAGTGCCAGGCGTGGGGGACGGTCGAGGAGTACGGCGCGCCCGCCGTGCGGACGACCGCGCCCGGCC
GGGTCACGACGTCCGCCGTCCCGATCGGCCAGGTCGACGCCCGGCAGGCCACCGCCCGCTCCACCGGCGTGCCCGAGCTC
GACCGGGTCCTCGGCGGGGGCCTCGTCCCCGGCGCCGTCGTCCTGGTCGCGGGCGAGCCCGGCGTCGGTAAGTCCACCCT
CCTGCTCGACGTCGCCGCCAAGGCCGCCAGCGACGAGCACCGCACCCTGTACGTCACGGGCGAGGAGTCGGCCAGCCAGG
TCCGGATGCGCGCCGACCGCATCAAGGCGATCGACGACCATCTGTATCTCGCCGCCGAGACCGATCTGTCCGCGGTCCTC
GGCCACTTGGACGCCGTCAAGCCCAGCCTCCTGATCATGGACTCCGTACAGACCGTCGCCTCCCCCGAGATCGACGGCGC
CCCCGGCGGCATGGCCCAGGTCCGCGAGGTGGCCGGCGCCCTGATCCGCGCCTCCAAGGAGCGCGGCATGGCCACCCTCC
TCGTGGGTCACGTCACCAAGGACGGCGCCATCGCCGGACCCCGCCTCCTCGAGCACCTCGTGGACGTCGTCCTCTCCTTC
GAAGGCGACCGGCACGCGCGCCTGCGCCTCGTACGCGGCGTGAAGAACCGGTACGGGACGACCGACGAGGTCGGCTGCTT
CGAGCTGCACGACGAAGGCATCACCGGACTCGCCGACCCCAGCGGGCTGTTCCTCACCCGCCGCGCCGAACCCGTCCCGG
GCACCTGTCTGACCGTCACCCTGGAGGGGCGGCGGCCTCTCGTCGCCGAGGTTCAGGCCCTCACCGTCGACTCCCAGATC
CCGTCCCCTCGGCGCACCACGTCCGGTCTGGAGACGTCTCGCGTCTCGATGATGCTCGCCGTGCTCGAGCAGCGCGGGCG
GATCAGTGCGCTCGGAAAGCGGGACATCTACTCCGCGACCGTCGGCGGTGTGAAGCTCTCCGAGCCCGCCGCCGACCTCG
CCATCGCCCTCGCCCTCGCCAGTGCCGCCAGCGACACCCCGCTCCCCAAGAACCTCGTCGCGATCGGTGAAGTCGGCCTC
GCGGGCGAGGTCAGACGGGTGACCGGCGTGCAGCGCCGGCTCGCCGAGGCGCACCGGCTCGGCTTCACCCACGCCCTCGT
GCCGAGCGATCCGGGCAAGGTGCCCGCCGGTATGAAGGTCACCGAAGTCGCCGACATGGGGGATGCTCTGCGCGTACTGC
CCAGGAGCCGTCGCCGAGAGGCCCCACGGGAGACGGAGGAGCGCCGGTAG

Domains

Predicted by InterProScan.

AAA domain (AAA_25)

(77-222)

Subunit ChlI of Mg-chelatase (ChlI)

(369-429)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(14-41)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

42.92

96.375

0.414
  radA Streptococcus pneumoniae D39

42.539

95.736

0.407
  radA Streptococcus pneumoniae R6

42.539

95.736

0.407
  radA Streptococcus pneumoniae Rx1

42.539

95.736

0.407
  radA Streptococcus pneumoniae TIGR4

42.539

95.736

0.407
  radA Streptococcus mitis NCTC 12261

44

90.618

0.399
  radA Streptococcus mitis SK321

44

90.618

0.399