Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   MKI53_RS10550 Genome accession   NZ_CP092552
Coordinates   2129819..2130214 (-) Length   131 a.a.
NCBI ID   WP_000932695.1    Uniprot ID   -
Organism   Staphylococcus aureus strain VMRSA-WC081     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2124819..2135214
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MKI53_RS10525 (MKI53_002089) thiE 2125418..2126059 (-) 642 WP_000483153.1 thiamine phosphate synthase -
  MKI53_RS10530 (MKI53_002090) thiM 2126061..2126852 (-) 792 WP_001108483.1 hydroxyethylthiazole kinase -
  MKI53_RS10535 (MKI53_002091) thiD 2126836..2127666 (-) 831 WP_000594954.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  MKI53_RS10540 (MKI53_002092) tenA 2127659..2128348 (-) 690 WP_000396077.1 thiaminase II -
  MKI53_RS10545 (MKI53_002093) sceD 2128735..2129430 (-) 696 WP_000752005.1 lytic transglycosylase SceD -
  MKI53_RS10550 (MKI53_002094) ssb 2129819..2130214 (-) 396 WP_000932695.1 single-stranded DNA-binding protein Machinery gene
  MKI53_RS10555 (MKI53_002095) - 2130408..2130848 (+) 441 WP_000846746.1 YwpF-like family protein -
  MKI53_RS10560 (MKI53_002096) fabZ 2130907..2131347 (-) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  MKI53_RS10565 (MKI53_002097) murA 2131381..2132646 (-) 1266 WP_000358006.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  MKI53_RS10570 (MKI53_002098) - 2132757..2132990 (-) 234 WP_000384523.1 DUF1146 family protein -
  MKI53_RS10575 (MKI53_002099) - 2133122..2133214 (-) 93 WP_001790611.1 hypothetical protein -
  MKI53_RS10580 (MKI53_002100) - 2133552..2133956 (-) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15056.12 Da        Isoelectric Point: 5.6875

>NTDB_id=658701 MKI53_RS10550 WP_000932695.1 2129819..2130214(-) (ssb) [Staphylococcus aureus strain VMRSA-WC081]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIESQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=658701 MKI53_RS10550 WP_000932695.1 2129819..2130214(-) (ssb) [Staphylococcus aureus strain VMRSA-WC081]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATATACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGAGTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

99.237

100

0.992
  ssb Staphylococcus aureus MW2

98.473

100

0.985