Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   OHA19_RS21955 Genome accession   NZ_CP108309
Coordinates   4762883..4763482 (+) Length   199 a.a.
NCBI ID   WP_124719582.1    Uniprot ID   A0ABQ2VW36
Organism   Streptomyces sp. NBC_00012     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4757883..4768482
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHA19_RS21930 (OHA19_21840) - 4758045..4759418 (+) 1374 WP_405714141.1 aspartate aminotransferase family protein -
  OHA19_RS21935 (OHA19_21845) - 4759536..4760282 (+) 747 WP_405751245.1 GntR family transcriptional regulator -
  OHA19_RS21940 (OHA19_21850) - 4760406..4761056 (+) 651 WP_405714138.1 hypothetical protein -
  OHA19_RS21945 (OHA19_21855) - 4761260..4762054 (-) 795 WP_405721616.1 SLATT domain-containing protein -
  OHA19_RS21950 (OHA19_21860) - 4762424..4762759 (+) 336 WP_405721613.1 YbaB/EbfC family nucleoid-associated protein -
  OHA19_RS21955 (OHA19_21865) recR 4762883..4763482 (+) 600 WP_124719582.1 recombination mediator RecR Machinery gene
  OHA19_RS21960 (OHA19_21870) - 4763614..4764273 (+) 660 WP_405751248.1 DUF5063 domain-containing protein -
  OHA19_RS21965 (OHA19_21875) - 4764694..4765965 (+) 1272 WP_124719579.1 aspartate kinase -
  OHA19_RS21970 (OHA19_21880) - 4765962..4767026 (+) 1065 WP_405751251.1 aspartate-semialdehyde dehydrogenase -
  OHA19_RS21975 (OHA19_21885) - 4767395..4767970 (+) 576 WP_405721610.1 SigE family RNA polymerase sigma factor -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 21887.16 Da        Isoelectric Point: 5.1558

>NTDB_id=658684 OHA19_RS21955 WP_124719582.1 4762883..4763482(+) (recR) [Streptomyces sp. NBC_00012]
MYEGVVQDLIDELGRLPGVGPKSAQRIAFHILQAEPTDVRRLAHALLEVKDKVRFCSVCGNVAQQEQCNICRDTRRDPSV
ICVVEEPKDVVAIERTREFRGRYHVLGGAISPIEGVGPDDLRIRELLARLADGSITELILATDPNLEGEATATYLARMVK
PMGLRVTRLASGLPVGGDLEYADEVTLGRAFEGRRLLDV

Nucleotide


Download         Length: 600 bp        

>NTDB_id=658684 OHA19_RS21955 WP_124719582.1 4762883..4763482(+) (recR) [Streptomyces sp. NBC_00012]
TTGTATGAAGGCGTGGTTCAGGACCTCATCGACGAGTTGGGCAGGCTGCCCGGCGTCGGTCCCAAGAGCGCGCAGCGGAT
CGCCTTCCATATCCTGCAGGCCGAGCCGACCGATGTGCGTCGCCTCGCCCATGCCCTCCTGGAGGTCAAGGACAAGGTCC
GGTTCTGTTCGGTCTGCGGCAACGTCGCCCAGCAGGAGCAGTGCAACATCTGCCGGGACACGCGCCGGGACCCGTCGGTG
ATCTGCGTGGTCGAGGAGCCGAAGGACGTCGTCGCGATCGAGCGGACCCGTGAGTTCCGGGGCCGGTACCACGTGCTCGG
CGGCGCGATCAGCCCGATCGAGGGCGTCGGCCCGGACGATCTGCGCATCCGTGAGCTGCTCGCCCGCCTCGCCGACGGTT
CGATCACGGAGCTGATCCTGGCGACCGACCCCAACCTGGAGGGCGAGGCCACCGCGACGTACCTGGCGCGGATGGTCAAG
CCGATGGGCCTGCGGGTCACCAGACTGGCCAGCGGCCTGCCGGTCGGCGGCGACCTGGAGTACGCGGACGAGGTCACCCT
GGGTCGCGCCTTCGAGGGGAGGCGCCTGCTCGATGTGTGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH)

(2-27)

Toprim domain (Toprim_4)

(79-170)

RecR protein (RecR_ZnF)

(38-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

56.633

98.492

0.558
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

54.124

97.487

0.528
  recR Streptococcus pneumoniae R6

46.392

97.487

0.452