Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   OG613_RS25865 Genome accession   NZ_CP108306
Coordinates   5835811..5837220 (-) Length   469 a.a.
NCBI ID   WP_020132462.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00015     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5830811..5842220
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG613_RS25840 (OG613_25830) - 5831048..5831707 (-) 660 WP_267019039.1 hypothetical protein -
  OG613_RS25845 (OG613_25835) - 5831692..5832234 (-) 543 WP_020132466.1 SigE family RNA polymerase sigma factor -
  OG613_RS25850 (OG613_25840) - 5832535..5833467 (-) 933 WP_267019038.1 A/G-specific adenine glycosylase -
  OG613_RS25855 (OG613_25845) - 5833728..5834582 (+) 855 WP_405967638.1 hypothetical protein -
  OG613_RS25860 (OG613_25850) disA 5834606..5835730 (-) 1125 WP_020132463.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  OG613_RS25865 (OG613_25855) radA/sms 5835811..5837220 (-) 1410 WP_020132462.1 DNA repair protein RadA Machinery gene
  OG613_RS25870 (OG613_25860) - 5837496..5839259 (+) 1764 WP_405967639.1 BACON domain-containing protein -
  OG613_RS25875 (OG613_25865) - 5839383..5840261 (-) 879 WP_405967640.1 hypothetical protein -
  OG613_RS25880 (OG613_25870) - 5840333..5841265 (+) 933 WP_020132459.1 Ppx/GppA phosphatase family protein -

Sequence

Protein


Download         Length: 469 a.a.        Molecular weight: 49679.82 Da        Isoelectric Point: 7.7220

>NTDB_id=658608 OG613_RS25865 WP_020132462.1 5835811..5837220(-) (radA/sms) [Streptomyces sp. NBC_00015]
MAARTKTTKDRPSYRCTECGWQTAKWLGRCPECQAWGTVEEYGTPAVRTTTPGRVTTSALPIGQVDGRTATARPTGVPEL
DRVLGGGLVPGAVVLLAGEPGVGKSTLLLDVAAKSASDEHRTLYVTGEESASQVRMRADRIGAIDDHLYLAAETDLAAVL
GHLDAVKPSLLIMDSVQTVASPEIDGAPGGMAQVREVAGALIRASKERGMSTLLVGHVTKDGAIAGPRLLEHLVDVVLSF
EGDRHARLRLVRGVKNRYGATDEVGCFELHDEGITGLADPSGLFLTRRDEPVPGTCLTVTLEGRRPLVAEVQALTVDSQI
PSPRRTTSGLETSRVSMMLAVLEQRGKISALGKRDIYSATVGGVKLSEPAADLAIALALASAASDTPLPKNLVAIGEVGL
AGEVRRVTGVQRRLSEAHRLGFTHALVPSDPGKIPAGMKVLEVADIGDALRVLPRSRRRDAPRDAEERR

Nucleotide


Download         Length: 1410 bp        

>NTDB_id=658608 OG613_RS25865 WP_020132462.1 5835811..5837220(-) (radA/sms) [Streptomyces sp. NBC_00015]
ATGGCTGCCCGCACGAAGACCACCAAGGACCGTCCGTCCTACCGCTGCACGGAGTGCGGCTGGCAGACGGCCAAGTGGCT
CGGCCGCTGCCCCGAGTGCCAGGCCTGGGGGACGGTCGAGGAGTACGGCACGCCCGCGGTCCGTACGACGACGCCGGGGC
GCGTCACGACGTCCGCCCTGCCCATCGGCCAGGTCGACGGGCGGACGGCCACCGCCCGCCCCACCGGCGTGCCCGAGCTG
GACCGCGTGCTGGGCGGCGGACTCGTACCGGGCGCGGTCGTCCTGCTCGCCGGCGAGCCGGGCGTCGGCAAGTCGACCCT
CCTGCTGGACGTGGCGGCCAAGTCGGCGAGCGACGAACACCGCACGCTGTATGTGACCGGCGAGGAATCGGCCTCCCAGG
TCCGCATGCGCGCCGACCGCATCGGCGCCATCGACGACCACCTGTATCTGGCCGCCGAGACCGATCTGGCGGCCGTCCTG
GGTCACTTGGACGCGGTGAAGCCGTCACTGCTGATCATGGACTCGGTACAGACCGTGGCCTCCCCGGAGATCGACGGAGC
GCCCGGCGGCATGGCCCAGGTCCGCGAGGTCGCCGGCGCCCTGATCCGCGCCTCCAAGGAACGCGGCATGTCCACGCTTC
TGGTGGGCCATGTCACGAAGGACGGCGCGATCGCCGGCCCCCGCCTCCTCGAACACCTCGTGGACGTCGTGCTGAGCTTC
GAGGGAGACCGTCACGCGCGTCTGCGCCTGGTGCGGGGCGTCAAGAACCGCTACGGCGCCACCGACGAGGTCGGCTGCTT
CGAGCTGCACGACGAGGGCATTACGGGCCTTGCCGACCCAAGCGGACTCTTCCTGACCCGACGTGACGAACCGGTTCCGG
GTACCTGTCTGACGGTCACCCTGGAGGGCCGCCGCCCCCTGGTCGCCGAAGTGCAGGCCCTCACCGTCGACTCGCAGATC
CCCTCACCCCGCCGCACGACGTCCGGCCTGGAGACCTCCCGGGTCTCGATGATGCTGGCCGTCCTGGAGCAGCGCGGCAA
GATCAGCGCGCTGGGCAAGCGGGACATCTACTCGGCGACGGTCGGCGGGGTGAAGCTCTCGGAGCCCGCCGCGGACCTGG
CGATCGCCCTCGCCCTGGCCTCCGCCGCGAGCGACACCCCGCTGCCCAAGAACCTGGTCGCGATCGGCGAAGTCGGCCTC
GCGGGCGAGGTCAGACGGGTCACGGGCGTCCAGCGCAGGCTCTCGGAGGCACACCGTCTGGGCTTCACCCACGCGCTCGT
GCCGAGCGATCCCGGCAAGATCCCCGCGGGCATGAAGGTCCTGGAAGTCGCGGACATAGGGGACGCCCTGCGGGTCCTGC
CGCGCTCCCGTCGACGAGACGCCCCACGGGATGCGGAGGAGCGCCGGTAG

Domains

Predicted by InterProScan.

Subunit ChlI of Mg-chelatase (ChlI)

(369-429)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(14-41)

AAA domain (AAA_25)

(78-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

42.92

96.375

0.414
  radA Streptococcus mitis SK321

42.699

96.375

0.412
  radA Streptococcus mitis NCTC 12261

42.699

96.375

0.412
  radA Streptococcus pneumoniae Rx1

42.762

95.736

0.409
  radA Streptococcus pneumoniae TIGR4

42.762

95.736

0.409
  radA Streptococcus pneumoniae D39

42.762

95.736

0.409
  radA Streptococcus pneumoniae R6

42.762

95.736

0.409