Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   MKI60_RS04645 Genome accession   NZ_CP092544
Coordinates   959378..960364 (+) Length   328 a.a.
NCBI ID   WP_000959283.1    Uniprot ID   -
Organism   Staphylococcus aureus strain VMRSA-WC102     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 954378..965364
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MKI60_RS04620 (MKI60_000913) opp4B 954592..955554 (+) 963 WP_000915997.1 oligopeptide ABC transporter permease -
  MKI60_RS04625 (MKI60_000914) opp4C 955566..956447 (+) 882 WP_001180280.1 oligopeptide ABC transporter permease -
  MKI60_RS04630 (MKI60_000915) trpS 956489..957478 (-) 990 WP_000448934.1 tryptophan--tRNA ligase -
  MKI60_RS04635 (MKI60_000916) spxA 957772..958167 (+) 396 WP_000258003.1 transcriptional regulator SpxA -
  MKI60_RS04640 (MKI60_000917) mecA 958538..959257 (+) 720 WP_001217728.1 adaptor protein MecA -
  MKI60_RS04645 (MKI60_000918) coiA 959378..960364 (+) 987 WP_000959283.1 competence protein CoiA family protein Machinery gene
  MKI60_RS04650 (MKI60_000919) pepF 960412..962220 (+) 1809 WP_000082725.1 oligoendopeptidase F -
  MKI60_RS04655 (MKI60_000920) yjbH 962680..963486 (-) 807 WP_000896697.1 protease adaptor protein YjbH -
  MKI60_RS04660 (MKI60_000921) - 963509..963874 (-) 366 WP_000214070.1 truncated hemoglobin YjbI -
  MKI60_RS04665 (MKI60_000922) - 963978..964571 (-) 594 WP_000224619.1 CYTH domain-containing protein -
  MKI60_RS04670 (MKI60_000923) - 964757..965104 (+) 348 WP_001242103.1 hypothetical protein -

Sequence

Protein


Download         Length: 328 a.a.        Molecular weight: 38904.58 Da        Isoelectric Point: 9.5554

>NTDB_id=658547 MKI60_RS04645 WP_000959283.1 959378..960364(+) (coiA) [Staphylococcus aureus strain VMRSA-WC102]
MLVALNEEKERVLATTALRKTQYFCPVCGKQVILKRGLKVISHFAHKHLAEQKCFNNETIKHYKSKLILAQMIQQQGCKV
EIEPFLKEIKQIPDILINNKYVIELQYSPIPYKQILQRTEGLKKMGYKVSWLLNDVDYCHNKVKFNHFHSLFINPITRKL
HTFNLEKKQIMMFQQIQYLGGYKYVAEKRNAKIIELFNEAPCDYHAVYKLSKFAINQYIKYCRWQNSVLEPTLSAMYQLQ
LTDQEVVYNYGYIFPEQIYIENHPIEWQLQVDLWLKNGKSKLVNDNLNYFKLKKFIVALESKTAIIEKLINNYLNICSDR
GNDVQILF

Nucleotide


Download         Length: 987 bp        

>NTDB_id=658547 MKI60_RS04645 WP_000959283.1 959378..960364(+) (coiA) [Staphylococcus aureus strain VMRSA-WC102]
ATGTTAGTAGCTTTAAATGAAGAAAAGGAACGTGTGTTAGCAACTACTGCATTGAGAAAGACACAATATTTTTGTCCTGT
GTGTGGCAAGCAAGTTATTTTAAAGCGTGGGCTCAAAGTAATTAGTCATTTTGCACATAAACATTTAGCGGAACAAAAAT
GTTTTAATAATGAAACGATTAAACATTATAAAAGTAAATTGATTTTAGCACAGATGATACAGCAACAAGGATGTAAAGTA
GAGATAGAGCCATTTTTAAAAGAAATAAAACAAATTCCGGATATTTTGATTAATAATAAATATGTTATTGAGCTACAGTA
TTCGCCAATTCCTTATAAACAGATTCTTCAACGAACGGAAGGTTTAAAGAAAATGGGATATAAAGTAAGTTGGTTATTAA
ATGATGTTGATTATTGTCATAATAAAGTGAAGTTCAATCATTTTCATAGTTTGTTTATTAATCCAATCACTCGAAAACTT
CATACGTTCAATTTAGAGAAAAAACAAATAATGATGTTTCAACAAATACAATATTTAGGCGGGTACAAATATGTCGCTGA
AAAAAGGAATGCCAAAATTATTGAGTTGTTTAATGAGGCGCCTTGTGATTATCATGCTGTTTATAAATTATCAAAGTTCG
CAATTAATCAATATATCAAATATTGTCGCTGGCAAAATTCTGTTTTAGAACCCACTTTAAGTGCAATGTATCAATTACAG
TTAACTGATCAAGAAGTAGTGTACAATTATGGTTATATTTTTCCAGAGCAAATTTATATTGAAAATCATCCAATTGAGTG
GCAATTACAAGTTGATTTATGGTTAAAGAATGGAAAAAGCAAATTAGTAAATGACAATCTTAATTATTTTAAACTGAAAA
AATTTATTGTTGCTCTAGAAAGTAAAACAGCAATTATAGAAAAACTTATTAACAATTATTTAAATATTTGTTCAGATAGA
GGTAATGACGTGCAAATTTTGTTCTAA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(6-308)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Staphylococcus aureus N315

99.695

100

0.997
  coiA Staphylococcus aureus MW2

97.256

100

0.973