Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   OHU89_RS28035 Genome accession   NZ_CP108302
Coordinates   5931069..5932478 (-) Length   469 a.a.
NCBI ID   WP_266889267.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00019     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5926069..5937478
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHU89_RS28010 (OHU89_27960) - 5926160..5926879 (-) 720 WP_405646829.1 hypothetical protein -
  OHU89_RS28015 (OHU89_27965) - 5926864..5927406 (-) 543 WP_046263315.1 SigE family RNA polymerase sigma factor -
  OHU89_RS28020 (OHU89_27970) - 5927643..5928578 (-) 936 WP_405646832.1 A/G-specific adenine glycosylase -
  OHU89_RS28025 (OHU89_27975) - 5928934..5929761 (+) 828 WP_405646835.1 hypothetical protein -
  OHU89_RS28030 (OHU89_27980) disA 5929863..5930987 (-) 1125 WP_046263317.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  OHU89_RS28035 (OHU89_27985) radA 5931069..5932478 (-) 1410 WP_266889267.1 DNA repair protein RadA Machinery gene
  OHU89_RS28040 (OHU89_27990) - 5932677..5934359 (+) 1683 WP_405646837.1 BACON domain-containing protein -
  OHU89_RS28045 (OHU89_27995) - 5934368..5935219 (-) 852 WP_405646839.1 hypothetical protein -
  OHU89_RS28050 (OHU89_28000) - 5935291..5936232 (+) 942 WP_266889263.1 Ppx/GppA phosphatase family protein -
  OHU89_RS28055 (OHU89_28005) - 5936335..5937159 (+) 825 WP_266889262.1 sugar phosphate isomerase/epimerase -

Sequence

Protein


Download         Length: 469 a.a.        Molecular weight: 49712.86 Da        Isoelectric Point: 7.7220

>NTDB_id=658417 OHU89_RS28035 WP_266889267.1 5931069..5932478(-) (radA) [Streptomyces sp. NBC_00019]
MAARTKTAKDRPAYRCTECGWQTAKWLGRCPECQAWGTVEEYGAPAVRTTAPGRVTTSAVPIGQVDGRTATARSTGVPEL
DRVLGGGLVPGAVVLLAGEPGVGKSTLLLDVAAKSASDEHRTLYVTGEESASQVRLRADRIKAIDDHLYLAAETDLSAVL
GHLDAVKPSLLILDSVQTIASPEIDGAPGGMAQVREVAGALIRASKDRGMSTLLVGHVTKDGAIAGPRLLEHLVDVVLSF
EGDRHARLRLVRGVKNRYGATDEVGCFELHDEGITGLTDPSGLFLTRRDEPVPGTCLTVTLEGRRPLVAEVQALTVDSQI
PSPRRTTSGLETSRVSMMLAVLEQRGRISALGKRDIYSATVGGVKLSEPAADLAIALALASAASDTPLPKNLVAIGEVGL
AGEVRRVTGVQRRLAEAHRLGFTHALVPGDPGKIPVGMKVLEVADIGEALRVLPRSRRRDAPRDEEERR

Nucleotide


Download         Length: 1410 bp        

>NTDB_id=658417 OHU89_RS28035 WP_266889267.1 5931069..5932478(-) (radA) [Streptomyces sp. NBC_00019]
ATGGCTGCCCGTACGAAGACCGCCAAGGACCGACCCGCCTACCGCTGCACGGAGTGCGGCTGGCAGACGGCGAAGTGGCT
CGGCCGCTGCCCCGAATGCCAGGCGTGGGGCACCGTCGAGGAGTACGGCGCGCCCGCGGTGCGTACGACGGCACCGGGCC
GTGTCACCACCTCCGCCGTGCCCATCGGCCAGGTCGACGGCCGCACGGCCACCGCCCGCTCCACCGGCGTACCCGAACTG
GACCGGGTGCTCGGCGGCGGACTCGTACCCGGCGCGGTCGTCCTGCTCGCGGGCGAGCCCGGCGTGGGAAAGTCGACCCT
CCTCCTCGACGTGGCGGCCAAGTCGGCGAGCGACGAGCACCGCACGCTGTACGTCACGGGTGAGGAGTCGGCCAGCCAGG
TCCGGCTGCGCGCCGACCGCATCAAGGCCATCGACGACCATCTGTACCTCGCCGCGGAGACCGACCTGTCCGCGGTCCTG
GGCCACTTGGACGCGGTGAAGCCGTCCCTGCTGATCCTCGACTCCGTACAGACGATCGCGTCCCCCGAGATCGACGGCGC
CCCCGGCGGCATGGCCCAGGTGCGGGAGGTGGCGGGCGCGCTCATCCGCGCCTCCAAGGACCGCGGCATGTCCACCCTCC
TCGTCGGCCATGTCACCAAGGACGGCGCCATCGCGGGCCCGCGCCTGCTGGAGCACCTCGTGGACGTGGTGCTCTCCTTC
GAGGGCGACCGGCACGCACGCCTGCGTCTGGTCCGCGGCGTCAAGAACCGGTACGGCGCGACGGACGAGGTCGGCTGCTT
CGAACTGCACGATGAGGGCATTACCGGCCTTACCGACCCGAGCGGACTTTTCCTGACCCGTCGTGACGAACCGGTCCCCG
GTACCTGTCTGACGGTCACCCTGGAGGGCCGACGCCCGCTGGTCGCCGAGGTCCAGGCCCTCACCGTCGACTCACAGATC
CCCTCACCCCGCCGTACGACCTCCGGCCTGGAGACCTCCCGCGTCTCGATGATGCTCGCCGTTCTGGAGCAGCGAGGCAG
AATCAGTGCACTCGGCAAGAGAGACATCTACTCCGCGACGGTCGGCGGAGTGAAGCTGTCGGAGCCGGCCGCGGACCTCG
CCATCGCCCTCGCGCTGGCGTCGGCGGCGAGCGACACCCCACTGCCCAAGAACCTCGTCGCGATCGGCGAAGTGGGCCTT
GCGGGCGAGGTCAGACGGGTCACGGGGGTCCAGCGCCGGCTCGCCGAGGCACACCGTCTGGGCTTCACCCACGCCCTCGT
ACCGGGCGACCCGGGCAAGATCCCTGTCGGCATGAAGGTCCTGGAAGTCGCCGACATAGGAGAGGCCCTGAGGGTCCTTC
CGCGGTCGCGTCGGCGAGACGCCCCACGGGACGAGGAGGAGCGCCGGTAG

Domains

Predicted by InterProScan.

Subunit ChlI of Mg-chelatase (ChlI)

(369-428)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(14-41)

AAA domain (AAA_25)

(78-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis SK321

43.488

96.588

0.42
  radA/sms Bacillus subtilis subsp. subtilis str. 168

43.488

96.588

0.42
  radA Streptococcus mitis NCTC 12261

43.488

96.588

0.42
  radA Streptococcus pneumoniae Rx1

43.556

95.949

0.418
  radA Streptococcus pneumoniae TIGR4

43.556

95.949

0.418
  radA Streptococcus pneumoniae D39

43.556

95.949

0.418
  radA Streptococcus pneumoniae R6

43.556

95.949

0.418