Detailed information NTG0658398

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: UPHL_RS21495
• Genome accession: NZ_CP092536
• Coordinates: 4412055..4412855 (+)
• Length: 266 a.a.
• NCBI ID: WP_002888947.1
• Uniprot ID: -
• Organism: Klebsiella pneumoniae strain 2021CK-00720
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4407055..4417855

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
UPHL_RS21460 (UPHL_004277)	gspH	4407211..4407726 (+)	516	WP_004191951.1	type II secretion system minor pseudopilin GspH	-
UPHL_RS21465 (UPHL_004278)	gspI	4407723..4408088 (+)	366	WP_002889025.1	type II secretion system minor pseudopilin GspI	-
UPHL_RS21470 (UPHL_004279)	gspJ	4408085..4408681 (+)	597	WP_004222700.1	type II secretion system minor pseudopilin GspJ	-
UPHL_RS21475 (UPHL_004280)	gspK	4408678..4409664 (+)	987	WP_004222697.1	type II secretion system minor pseudopilin GspK	-
UPHL_RS21480 (UPHL_004281)	gspL	4409651..4410844 (+)	1194	WP_004191957.1	type II secretion system protein GspL	-
UPHL_RS21485 (UPHL_004282)	-	4410837..4411322 (+)	486	WP_004151943.1	type II secretion system protein M	-
UPHL_RS21490 (UPHL_004283)	-	4411312..4412058 (+)	747	WP_004145897.1	type II secretion system protein N	-
UPHL_RS21495 (UPHL_004284)	pilD	4412055..4412855 (+)	801	WP_002888947.1	A24 family peptidase	Machinery gene
UPHL_RS21500 (UPHL_004285)	hrpB	4412903..4415332 (-)	2430	WP_029884482.1	ATP-dependent helicase HrpB	-
UPHL_RS21505 (UPHL_004286)	thpR	4415405..4415941 (+)	537	WP_004145901.1	RNA 2',3'-cyclic phosphodiesterase	-
UPHL_RS21510 (UPHL_004287)	sfsA	4415941..4416657 (+)	717	WP_002888848.1	DNA/RNA nuclease SfsA	-
UPHL_RS21515 (UPHL_004288)	dksA	4416820..4417275 (+)	456	WP_002888845.1	RNA polymerase-binding protein DksA	-

Sequence

Protein

• Length: 266 a.a.
• Molecular weight: 29419.04 Da
• Isoelectric Point: 8.8894

>NTDB_id=658398 UPHL_RS21495 WP_002888947.1 4412055..4412855(+) (pilD) [Klebsiella pneumoniae strain 2021CK-00720]
MTTLAALSLHFPFVWYGFLLLFGLALGSFYNVVIYRLPRMLTQTADDERITLSTPGSSCPQCRQPIAWRDNIPLLSFLWL
GRRARCCQAPIAWSYPLTELATGLLFILAGALLAPGLPLAGGLVLLSFLLILARIDARTQLLPDRLTLPLLWAGLLFNLN
EVYIALPDAVAGAMAGYLALWSVYWLFRLLTGKEALGYGDFKLLAALGAWCGWQVLPQVLLLASASGLVWTLLQRLWTRQ
SLQQPLAFGPWLALAGGSIFLWQQMV

Nucleotide

• Length: 801 bp

>NTDB_id=658398 UPHL_RS21495 WP_002888947.1 4412055..4412855(+) (pilD) [Klebsiella pneumoniae strain 2021CK-00720]
ATGACGACACTAGCCGCGTTATCGCTGCACTTTCCCTTTGTCTGGTATGGCTTTCTACTGCTGTTCGGCCTGGCGCTGGG
CAGCTTTTACAATGTGGTGATCTATCGTCTGCCGCGCATGTTGACCCAGACCGCGGACGACGAGCGGATAACCCTCAGCA
CCCCGGGCTCTTCCTGCCCGCAGTGCCGCCAGCCGATCGCCTGGCGGGACAATATCCCGCTGCTCAGTTTCCTCTGGCTG
GGCCGTCGCGCCCGCTGCTGTCAGGCGCCCATCGCGTGGAGCTATCCGCTGACCGAGCTGGCCACCGGCCTGCTGTTTAT
CCTCGCCGGAGCTTTGCTGGCGCCGGGCCTGCCGCTGGCGGGCGGCCTGGTGCTGCTCTCGTTCCTGCTGATACTGGCGC
GGATTGACGCCCGGACCCAGCTGCTGCCCGATCGCCTGACTCTGCCCCTGCTGTGGGCCGGGCTGCTGTTCAATCTTAAC
GAGGTGTACATTGCCCTGCCGGATGCGGTCGCCGGGGCGATGGCCGGTTATCTGGCGCTGTGGTCGGTCTACTGGCTGTT
CCGCCTGCTGACCGGGAAAGAGGCGCTGGGCTATGGCGATTTTAAGCTGCTGGCGGCGCTGGGCGCCTGGTGCGGCTGGC
AGGTTCTGCCGCAGGTGCTGTTGCTCGCTTCGGCCAGCGGGCTGGTGTGGACCCTGCTGCAACGCCTGTGGACCCGGCAG
TCGCTGCAGCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCCGGCGGGAGTATTTTTCTCTGGCAGCAGATGGTCTA
G

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-109)

• Type IV leader peptidase family (Peptidase_A24) (123-231)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.434	99.624	0.492
pilD	Vibrio campbellii strain DS40M4	46.182	100	0.477
pilD	Acinetobacter nosocomialis M2	46.008	98.872	0.455
pilD	Acinetobacter baumannii D1279779	45.247	98.872	0.447
pilD	Neisseria gonorrhoeae MS11	43.295	98.12	0.425