Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   OG235_RS25080 Genome accession   NZ_CP108298
Coordinates   5693828..5694427 (-) Length   199 a.a.
NCBI ID   WP_326579680.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00024     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5688828..5699427
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG235_RS25060 (OG235_25005) - 5689708..5690550 (+) 843 WP_327728447.1 alpha/beta hydrolase -
  OG235_RS25065 (OG235_25010) - 5690547..5691482 (-) 936 WP_327728448.1 M56 family metallopeptidase -
  OG235_RS25070 (OG235_25015) - 5692007..5692591 (-) 585 WP_328223753.1 hypothetical protein -
  OG235_RS25075 (OG235_25020) - 5693173..5693835 (-) 663 WP_327728450.1 DUF5063 domain-containing protein -
  OG235_RS25080 (OG235_25025) recR 5693828..5694427 (-) 600 WP_326579680.1 recombination mediator RecR Machinery gene
  OG235_RS25085 (OG235_25030) - 5694572..5694919 (-) 348 WP_326579682.1 YbaB/EbfC family nucleoid-associated protein -
  OG235_RS25090 (OG235_25035) - 5695215..5695982 (+) 768 WP_327728451.1 SLATT domain-containing protein -
  OG235_RS25095 (OG235_25040) - 5696128..5696301 (+) 174 Protein_4990 SGNH/GDSL hydrolase family protein -
  OG235_RS25100 (OG235_25045) - 5696343..5698703 (-) 2361 WP_405960639.1 serine/threonine-protein kinase -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 21890.24 Da        Isoelectric Point: 4.9909

>NTDB_id=658322 OG235_RS25080 WP_326579680.1 5693828..5694427(-) (recR) [Streptomyces sp. NBC_00024]
MYEGVVQDLIDELGRLPGVGPKSAQRIAFHILQAEPTDVRRLAQTLLEVKARVRFCATCGNVAQEELCNICRDPRRDPTV
ICVVEEPKDVVAIERTREFRGRYHVLGGAISPIEGVGPDDLRIRELLTRLADGTVTELILATDPNLEGEATATYLARMIK
PMGLKVTRLASGLPVGGDLEYADEVTLGRAFEGRRLLDV

Nucleotide


Download         Length: 600 bp        

>NTDB_id=658322 OG235_RS25080 WP_326579680.1 5693828..5694427(-) (recR) [Streptomyces sp. NBC_00024]
GTGTACGAAGGCGTGGTCCAGGACCTCATCGACGAACTGGGGCGGTTGCCCGGCGTCGGTCCCAAGAGCGCGCAGCGGAT
CGCCTTCCACATCCTGCAGGCGGAGCCGACGGACGTACGGCGGCTCGCGCAGACCCTCCTCGAAGTGAAGGCGAGGGTCC
GTTTCTGCGCGACCTGCGGCAATGTCGCGCAGGAGGAGCTGTGCAACATCTGCCGCGACCCGCGCCGCGACCCGACGGTC
ATCTGTGTCGTCGAGGAGCCGAAGGACGTCGTGGCGATCGAACGCACTCGCGAATTCCGGGGCCGGTACCACGTCCTCGG
CGGCGCGATCAGCCCGATCGAGGGCGTCGGCCCGGACGACCTGCGGATACGGGAGCTGCTGACCCGTCTGGCCGACGGGA
CGGTCACCGAGCTGATCCTGGCCACGGACCCGAATCTCGAAGGCGAGGCCACGGCCACGTACCTCGCCCGCATGATCAAA
CCCATGGGCCTCAAGGTCACCCGCCTGGCCAGCGGCCTCCCGGTGGGCGGCGACCTGGAATACGCGGACGAGGTGACCCT
CGGCCGCGCCTTCGAGGGGAGACGATTGCTCGATGTCTGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH)

(2-27)

Toprim domain (Toprim_4)

(80-170)

RecR protein (RecR_ZnF)

(38-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

54.592

98.492

0.538
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

54.124

97.487

0.528
  recR Streptococcus pneumoniae R6

48.454

97.487

0.472