Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   OG235_RS23610 Genome accession   NZ_CP108298
Coordinates   5386856..5388265 (+) Length   469 a.a.
NCBI ID   WP_326579303.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00024     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5381856..5393265
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG235_RS23595 (OG235_23540) - 5382299..5383180 (+) 882 WP_327728324.1 hypothetical protein -
  OG235_RS23600 (OG235_23545) - 5383260..5384984 (-) 1725 WP_405895181.1 BACON domain-containing protein -
  OG235_RS23605 (OG235_23550) - 5385225..5386610 (+) 1386 WP_327728326.1 alpha/beta hydrolase -
  OG235_RS23610 (OG235_23555) radA/sms 5386856..5388265 (+) 1410 WP_326579303.1 DNA repair protein RadA Machinery gene
  OG235_RS23615 (OG235_23560) disA 5388347..5389471 (+) 1125 WP_037702381.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  OG235_RS23620 (OG235_23565) - 5389693..5390538 (-) 846 WP_326579308.1 hypothetical protein -
  OG235_RS23625 (OG235_23570) - 5390934..5391992 (+) 1059 WP_328223799.1 LLM class flavin-dependent oxidoreductase -
  OG235_RS23630 (OG235_23575) - 5392196..5393113 (+) 918 WP_326579311.1 A/G-specific adenine glycosylase -

Sequence

Protein


Download         Length: 469 a.a.        Molecular weight: 49826.99 Da        Isoelectric Point: 7.7528

>NTDB_id=658317 OG235_RS23610 WP_326579303.1 5386856..5388265(+) (radA/sms) [Streptomyces sp. NBC_00024]
MAARTKTAKDRPSYRCTECGWQTAKWLGRCPECQAWGTVEEYGTPAVRTTAPGRVTTSAVPIGQVDGRQATARTTGVPEL
DRVLGGGLVPGAVVLLAGEPGVGKSTLLLDVAAKAADAEHPTLYVTGEESAGQVRLRADRIKAIHDHLYLAAETDLAAVL
GHLDAVKPSLLILDSVQTVASPEIDGAPGGMAQVREVAGALIRASKERGMSTLLVGHVTKDGAIAGPRLLEHLVDVVLHF
EGDRHARLRLVRGVKNRYGATDEVGCFELHDEGITGLTDPSGLFLTRRDEPVPGTCLTVTLEGRRPLVAEVQSLTVDSQL
PSPRRTTSGLETSRVSMMLAVLEQRGRISALGKRDIYSATVGGVKLSEPAADLAIALALASAATDTPLPKNLVAIGEVGL
AGEVRRVTGVQRRLSEAHRLGFTHALVPSDPGRVPPGMKVLEVADMGDALRVLPRSRRREAPRDEEDRR

Nucleotide


Download         Length: 1410 bp        

>NTDB_id=658317 OG235_RS23610 WP_326579303.1 5386856..5388265(+) (radA/sms) [Streptomyces sp. NBC_00024]
ATGGCTGCCCGTACGAAGACCGCGAAGGACCGGCCGTCCTACCGCTGCACAGAGTGCGGCTGGCAGACGGCCAAGTGGCT
CGGCCGCTGCCCCGAATGCCAGGCGTGGGGCACGGTCGAGGAGTACGGCACGCCCGCCGTCCGTACGACCGCCCCCGGCC
GGGTCACCACCTCCGCCGTCCCCATCGGCCAGGTGGACGGCCGCCAGGCCACCGCCCGCACGACGGGCGTCCCGGAGCTC
GACCGGGTCCTCGGCGGCGGCCTCGTCCCCGGCGCCGTGGTCCTCCTCGCGGGCGAGCCGGGCGTGGGCAAGTCCACCCT
CCTCCTCGACGTCGCCGCCAAAGCCGCCGACGCCGAACACCCGACCCTCTACGTCACCGGCGAGGAGTCCGCCGGCCAGG
TCCGCCTGCGGGCCGACCGCATCAAGGCCATCCACGACCATCTCTACCTCGCCGCGGAGACCGACCTCGCCGCCGTACTG
GGCCACTTGGACGCGGTCAAGCCGTCCCTGCTGATCCTCGACTCGGTCCAGACCGTCGCCTCTCCCGAGATCGACGGCGC
CCCCGGCGGCATGGCCCAGGTCCGCGAGGTCGCCGGCGCCCTGATCCGCGCCTCCAAGGAACGCGGCATGTCGACGCTCC
TCGTGGGCCACGTCACCAAGGACGGCGCGATCGCGGGCCCCCGCCTCCTGGAGCACCTCGTCGACGTGGTCCTGCACTTC
GAGGGCGACCGCCACGCCCGCCTCCGCCTGGTGCGCGGCGTCAAGAACCGCTACGGCGCCACGGACGAGGTCGGCTGCTT
CGAGCTGCACGACGAGGGCATCACCGGTCTCACGGACCCCAGCGGCCTCTTCCTCACCCGCCGCGACGAACCCGTCCCCG
GCACCTGTCTGACCGTGACCCTGGAGGGCCGCCGCCCCCTGGTCGCGGAAGTGCAGTCGCTCACAGTCGACTCGCAGCTC
CCCTCCCCCCGCCGTACGACCTCCGGCCTGGAGACCTCCCGGGTCTCGATGATGCTCGCGGTGCTGGAGCAGCGCGGCCG
TATCAGCGCCCTCGGCAAGCGGGACATCTACTCGGCGACGGTCGGCGGGGTGAAGCTCTCGGAGCCCGCGGCGGACCTCG
CGATCGCGCTGGCCCTGGCCTCCGCGGCGACCGACACCCCCCTGCCCAAGAACCTCGTGGCGATCGGCGAAGTCGGCCTC
GCGGGCGAGGTCAGAAGAGTCACCGGCGTCCAGCGCCGACTGTCCGAAGCACACCGCCTCGGCTTCACCCACGCGCTCGT
TCCGTCCGATCCCGGCAGGGTTCCTCCCGGTATGAAGGTCCTGGAAGTGGCCGACATGGGAGATGCTCTGCGGGTACTGC
CCCGATCCCGTCGGCGAGAGGCCCCACGGGACGAGGAGGACCGCCGGTAG

Domains

Predicted by InterProScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(14-41)

Subunit ChlI of Mg-chelatase (ChlI)

(369-429)

AAA domain (AAA_25)

(78-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

43.046

96.588

0.416
  radA Streptococcus mitis NCTC 12261

42.667

95.949

0.409
  radA Streptococcus mitis SK321

42.667

95.949

0.409
  radA Streptococcus pneumoniae Rx1

42.222

95.949

0.405
  radA Streptococcus pneumoniae D39

42.222

95.949

0.405
  radA Streptococcus pneumoniae R6

42.222

95.949

0.405
  radA Streptococcus pneumoniae TIGR4

42.222

95.949

0.405