Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   OG885_RS21155 Genome accession   NZ_CP108293
Coordinates   4741388..4741987 (-) Length   199 a.a.
NCBI ID   WP_329336605.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00028     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4736388..4746987
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG885_RS21120 (OG885_21055) - 4736552..4737283 (+) 732 WP_405733906.1 sulfite exporter TauE/SafE family protein -
  OG885_RS21125 (OG885_21060) - 4737284..4737862 (-) 579 WP_405733908.1 Uma2 family endonuclease -
  OG885_RS21130 (OG885_21065) - 4737913..4738926 (-) 1014 WP_405733910.1 hypothetical protein -
  OG885_RS21135 (OG885_21070) - 4739170..4739352 (-) 183 WP_405733912.1 DUF397 domain-containing protein -
  OG885_RS21140 (OG885_21075) - 4739349..4740164 (-) 816 WP_405733914.1 helix-turn-helix domain-containing protein -
  OG885_RS21145 (OG885_21080) - 4740243..4740653 (+) 411 WP_405733916.1 hypothetical protein -
  OG885_RS21150 (OG885_21085) - 4740733..4741395 (-) 663 WP_405733918.1 DUF5063 domain-containing protein -
  OG885_RS21155 (OG885_21090) recR 4741388..4741987 (-) 600 WP_329336605.1 recombination mediator RecR Machinery gene
  OG885_RS21160 (OG885_21095) - 4742087..4742428 (-) 342 WP_399952472.1 YbaB/EbfC family nucleoid-associated protein -
  OG885_RS21165 (OG885_21100) - 4742715..4743464 (+) 750 WP_405733921.1 SLATT domain-containing protein -
  OG885_RS21170 (OG885_21105) - 4743496..4743801 (-) 306 WP_405733923.1 hypothetical protein -
  OG885_RS21175 (OG885_21110) - 4743926..4745881 (-) 1956 WP_405733925.1 protein kinase domain-containing protein -
  OG885_RS21180 (OG885_21115) - 4746034..4746828 (-) 795 WP_405733927.1 hypothetical protein -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 21735.14 Da        Isoelectric Point: 4.9909

>NTDB_id=658237 OG885_RS21155 WP_329336605.1 4741388..4741987(-) (recR) [Streptomyces sp. NBC_00028]
MYEGVVQDLIDELGRLPGVGPKSAQRIAFHILQAEPTDVRRLAQALMEVKAKVRFCATCGNVAQEELCGICRDPRRDPTV
ICVVEEPKDVVAIERTREFRGKYHVLGGAISPIEGVGPDDLRIRELLARLADGTVTELILATDPNLEGEATATYLARMIK
PMGLKVTRLASGLPVGGDLEYADEVTLGRAFEGRRLLDV

Nucleotide


Download         Length: 600 bp        

>NTDB_id=658237 OG885_RS21155 WP_329336605.1 4741388..4741987(-) (recR) [Streptomyces sp. NBC_00028]
TTGTACGAAGGCGTGGTCCAGGACCTCATCGACGAACTGGGGCGGCTGCCCGGCGTCGGTCCCAAGAGCGCGCAGCGGAT
CGCCTTCCACATCCTCCAGGCGGAACCGACGGACGTACGGCGCCTCGCGCAGGCTCTGATGGAGGTCAAGGCGAAGGTCC
GCTTCTGCGCGACCTGCGGCAACGTGGCACAGGAGGAGCTGTGCGGCATCTGCCGTGACCCCCGCCGCGACCCCACCGTC
ATCTGTGTGGTGGAGGAGCCGAAGGACGTGGTGGCGATCGAGCGCACCCGGGAGTTCCGGGGCAAGTACCACGTCCTCGG
CGGCGCGATCAGCCCGATCGAGGGGGTCGGACCGGACGACCTGCGTATACGAGAACTTCTCGCCAGGTTGGCCGACGGGA
CGGTCACGGAACTGATCCTGGCCACGGACCCCAACCTGGAGGGCGAGGCAACTGCCACCTACCTCGCCCGCATGATCAAG
CCCATGGGCCTCAAGGTCACCCGCCTGGCCAGCGGCCTCCCGGTGGGTGGCGACCTGGAATACGCGGACGAGGTGACCCT
CGGCCGCGCCTTCGAGGGGAGACGACTCCTAGATGTCTGA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(38-77)

Helix-hairpin-helix motif (HHH)

(2-27)

Toprim domain (Toprim_4)

(80-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

55.102

98.492

0.543
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

54.124

97.487

0.528
  recR Streptococcus pneumoniae R6

47.423

97.487

0.462