Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   OG885_RS20320 Genome accession   NZ_CP108293
Coordinates   4560685..4562094 (+) Length   469 a.a.
NCBI ID   WP_405733553.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00028     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4555685..4567094
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG885_RS20300 (OG885_20240) - 4556026..4556958 (-) 933 WP_399952021.1 Ppx/GppA family phosphatase -
  OG885_RS20305 (OG885_20245) - 4557165..4557959 (+) 795 WP_405742799.1 hypothetical protein -
  OG885_RS20310 (OG885_20250) - 4558032..4559729 (-) 1698 WP_405733547.1 BACON domain-containing protein -
  OG885_RS20315 (OG885_20255) - 4559918..4560604 (+) 687 WP_405733550.1 hypothetical protein -
  OG885_RS20320 (OG885_20260) radA/sms 4560685..4562094 (+) 1410 WP_405733553.1 DNA repair protein RadA Machinery gene
  OG885_RS20325 (OG885_20265) disA 4562177..4563301 (+) 1125 WP_399952036.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  OG885_RS20330 (OG885_20270) - 4563322..4564149 (-) 828 WP_405733556.1 hypothetical protein -
  OG885_RS20335 (OG885_20275) - 4564331..4565275 (+) 945 WP_405733559.1 A/G-specific adenine glycosylase -
  OG885_RS20340 (OG885_20280) - 4565512..4566054 (+) 543 WP_399952043.1 SigE family RNA polymerase sigma factor -
  OG885_RS20345 (OG885_20285) - 4566039..4566761 (+) 723 WP_405733563.1 hypothetical protein -

Sequence

Protein


Download         Length: 469 a.a.        Molecular weight: 49575.73 Da        Isoelectric Point: 7.7232

>NTDB_id=658231 OG885_RS20320 WP_405733553.1 4560685..4562094(+) (radA/sms) [Streptomyces sp. NBC_00028]
MAARTKTAKDRPAFRCTECGWQTAKWLGRCPECQAWGTVEEYGAPAVRTTAPGRVTTSAVPIGQVDGRQATARSTGVPEL
DRVLGGGLVPGAVVLLAGEPGVGKSTLLLDVAAKSASDEHRTLYVTGEESASQVRLRADRIKAIDDHLYLAAETDLAAVL
GHLDAVKPSLLILDSVQTVASPEIDGAPGGMAQVREVAGALIRASKDRGMSTLLVGHVTKDGAIAGPRLLEHLVDVVLSF
EGDRHARLRLVRGVKNRYGATDEVGCFELHDEGITGLADPSGLFLTRRDEPVPGTCLTVTLEGRRPLVAEVQALTVDSQI
PSPRRTTSGLETSRVSMMLAVLEQRGRISALGKRDIYSATVGGVKLSEPAADLAIALALASAASDTPLPKNLVAIGEVGL
AGEVRRVTGVQRRLAEAHRLGFTHALVPGDPGKIPPGMKVLEVADIGDALRVLPRSRRREAPQDAEERR

Nucleotide


Download         Length: 1410 bp        

>NTDB_id=658231 OG885_RS20320 WP_405733553.1 4560685..4562094(+) (radA/sms) [Streptomyces sp. NBC_00028]
ATGGCTGCCCGTACGAAGACCGCCAAGGACCGCCCCGCCTTCCGCTGCACGGAGTGCGGCTGGCAGACGGCGAAGTGGCT
CGGCCGCTGCCCCGAATGCCAGGCATGGGGCACGGTCGAGGAGTACGGCGCGCCCGCGGTGCGTACGACGGCACCCGGCC
GCGTCACCACCTCCGCCGTGCCCATCGGCCAGGTCGACGGCCGTCAGGCCACCGCCCGCTCCACCGGCGTACCCGAGCTG
GACCGGGTGCTCGGCGGCGGCCTGGTCCCCGGCGCGGTCGTGCTGCTGGCGGGCGAGCCCGGAGTCGGCAAGTCCACGCT
CCTCCTCGACGTGGCGGCCAAGTCGGCGAGCGACGAGCACCGCACCTTGTACGTCACCGGCGAGGAGTCGGCCAGCCAGG
TCCGCCTACGCGCCGACCGCATCAAGGCCATCGACGACCATCTGTACCTCGCCGCGGAGACCGACCTGGCCGCCGTCCTC
GGCCACTTGGACGCGGTGAAGCCGTCCCTGCTCATCCTGGACTCCGTACAGACGGTGGCCTCACCGGAGATCGACGGCGC
CCCCGGCGGCATGGCCCAGGTGCGCGAGGTGGCGGGCGCGCTCATCCGGGCCTCCAAGGACCGCGGCATGTCCACGCTCC
TGGTGGGCCATGTCACGAAGGACGGCGCGATCGCGGGCCCGCGCCTGCTGGAGCACCTGGTGGACGTGGTGCTCTCCTTC
GAGGGCGACCGGCACGCGCGCCTGCGCCTGGTCCGGGGCGTCAAGAACCGGTACGGCGCGACGGACGAGGTCGGCTGCTT
CGAACTGCACGACGAGGGCATTACCGGCCTTGCCGACCCAAGCGGACTTTTCCTGACCCGTCGTGACGAACCGGTCCCCG
GCACCTGTCTGACGGTCACCCTGGAAGGCCGCCGCCCCCTGGTGGCCGAGGTCCAGGCGCTGACGGTCGACTCACAGATC
CCCTCCCCCAGGCGCACCACCTCCGGTCTGGAGACCTCCCGCGTCTCGATGATGCTGGCCGTCCTGGAGCAGCGGGGCCG
GATCAGCGCCCTCGGCAAGCGGGACATCTACTCCGCGACGGTCGGCGGGGTGAAGCTCTCGGAGCCCGCCGCGGACCTGG
CCATCGCCCTCGCGCTGGCCTCCGCGGCGAGCGACACCCCGCTGCCCAAGAACCTCGTCGCGATCGGTGAAGTGGGCCTC
GCGGGCGAGGTCAGACGGGTCACGGGCGTCCAGCGCCGCCTGGCCGAGGCGCACCGTCTGGGCTTCACCCACGCACTCGT
GCCGGGCGACCCCGGCAAGATCCCTCCCGGCATGAAGGTCCTGGAAGTCGCCGACATAGGAGACGCCCTGAGAGTCCTTC
CGCGCTCGCGTCGGCGAGAGGCCCCACAGGACGCGGAGGAGCGCCGGTAG

Domains

Predicted by InterProScan.

AAA domain (AAA_25)

(78-222)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(14-41)

Subunit ChlI of Mg-chelatase (ChlI)

(369-428)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

43.709

96.588

0.422
  radA Streptococcus mitis SK321

43.778

95.949

0.42
  radA Streptococcus mitis NCTC 12261

43.778

95.949

0.42
  radA Streptococcus pneumoniae TIGR4

43.333

95.949

0.416
  radA Streptococcus pneumoniae D39

43.333

95.949

0.416
  radA Streptococcus pneumoniae Rx1

43.333

95.949

0.416
  radA Streptococcus pneumoniae R6

43.333

95.949

0.416