Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   OG885_RS12900 Genome accession   NZ_CP108293
Coordinates   2959274..2960053 (+) Length   259 a.a.
NCBI ID   WP_405730494.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00028     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2954274..2965053
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG885_RS12885 (OG885_12835) - 2954489..2955022 (+) 534 WP_405730489.1 TerD family protein -
  OG885_RS12890 (OG885_12840) - 2955114..2958008 (-) 2895 WP_405730491.1 vitamin B12-dependent ribonucleotide reductase -
  OG885_RS12895 (OG885_12845) nrdR 2958170..2958712 (-) 543 WP_399950245.1 transcriptional regulator NrdR -
  OG885_RS12900 (OG885_12850) dinR/lexA 2959274..2960053 (+) 780 WP_405730494.1 transcriptional repressor LexA Regulator
  OG885_RS12905 (OG885_12855) - 2960204..2962177 (-) 1974 WP_405730496.1 ATP-dependent DNA helicase -
  OG885_RS12910 (OG885_12860) - 2962565..2963386 (-) 822 WP_405730498.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 27994.73 Da        Isoelectric Point: 6.9854

>NTDB_id=658210 OG885_RS12900 WP_405730494.1 2959274..2960053(+) (dinR/lexA) [Streptomyces sp. NBC_00028]
MTTTADSATITAQDRSQGRLEPVHAMNEAVNPEGQKRSLPGRPPGIRADSSGLTDRQRRVIEVIRDSVQRRGYPPSMREI
GQAVGLSSTSSVAHQLMALERKGFLRRDPHRPRAYEVRGSDQAASVQPTDTAGKPAASYVPLVGRIAAGGPILAEESVED
VFPLPRQLVGDGELFVLKVVGDSMIEAAICDGDWVTVRRQPVAENGDIVAAMLDGEATVKRFKREDGHVWLLPHNAAYEP
IPGDDATILGKVVAVLRRV

Nucleotide


Download         Length: 780 bp        

>NTDB_id=658210 OG885_RS12900 WP_405730494.1 2959274..2960053(+) (dinR/lexA) [Streptomyces sp. NBC_00028]
GTGACCACCACCGCAGACAGTGCCACCATCACTGCCCAGGACCGCTCCCAGGGCCGACTCGAGCCGGTGCATGCGATGAA
CGAAGCCGTGAATCCCGAGGGGCAAAAGCGCTCCCTACCCGGCCGACCTCCAGGCATCCGGGCCGACAGCTCTGGGCTCA
CCGATCGGCAGCGCCGGGTGATCGAGGTCATCAGGGACTCCGTGCAGCGGCGCGGCTACCCGCCGTCCATGCGGGAGATC
GGACAGGCGGTCGGCCTCTCCAGCACGTCCTCCGTCGCACACCAGCTCATGGCACTGGAGCGCAAGGGCTTCCTGCGCCG
CGACCCGCACCGCCCGCGCGCGTACGAGGTACGCGGCTCCGACCAGGCCGCCTCCGTGCAGCCCACGGACACCGCGGGCA
AGCCCGCCGCGTCGTACGTCCCGCTCGTCGGCCGTATCGCCGCCGGTGGCCCGATCCTCGCGGAGGAGTCCGTCGAGGAC
GTCTTCCCGCTCCCGCGCCAGCTCGTGGGCGACGGTGAGCTGTTCGTCCTCAAGGTGGTCGGCGACTCGATGATCGAGGC
CGCGATCTGCGACGGAGACTGGGTCACGGTCCGCCGCCAGCCGGTCGCCGAGAACGGCGACATCGTCGCCGCCATGCTCG
ACGGCGAGGCCACCGTCAAGCGCTTCAAGCGCGAGGACGGCCACGTCTGGCTCCTCCCGCACAACGCCGCGTACGAGCCC
ATCCCGGGCGACGACGCGACGATCCTCGGCAAGGTGGTGGCGGTGCTGCGCCGCGTGTGA

Domains

Predicted by InterProScan.

LexA DNA binding domain (LexA_DNA_bind)

(51-114)

Peptidase S24-like (Peptidase_S24)

(141-253)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

45.972

81.467

0.375