Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   MJ920_RS15010 Genome accession   NZ_CP092499
Coordinates   3045610..3046254 (-) Length   214 a.a.
NCBI ID   WP_003152052.1    Uniprot ID   A3KLB8
Organism   Bacillus velezensis strain YC_89     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3040610..3051254
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MJ920_RS14975 (MJ920_14950) - 3041795..3042226 (+) 432 WP_278269282.1 Na(+)/H(+) antiporter subunit B -
  MJ920_RS14980 (MJ920_14955) - 3042226..3042567 (+) 342 WP_278269283.1 Na(+)/H(+) antiporter subunit C -
  MJ920_RS14985 (MJ920_14960) - 3042560..3044041 (+) 1482 WP_278269284.1 Na+/H+ antiporter subunit D -
  MJ920_RS14990 (MJ920_14965) - 3044047..3044523 (+) 477 WP_077722767.1 Na+/H+ antiporter subunit E -
  MJ920_RS14995 (MJ920_14970) - 3044523..3044807 (+) 285 WP_003152057.1 Na(+)/H(+) antiporter subunit F1 -
  MJ920_RS15000 (MJ920_14975) mnhG 3044791..3045165 (+) 375 WP_003152056.1 monovalent cation/H(+) antiporter subunit G -
  MJ920_RS15005 (MJ920_14980) - 3045205..3045588 (-) 384 WP_007613430.1 hotdog fold thioesterase -
  MJ920_RS15010 (MJ920_14985) comA 3045610..3046254 (-) 645 WP_003152052.1 response regulator transcription factor Regulator
  MJ920_RS15015 (MJ920_14990) comP 3046335..3048638 (-) 2304 WP_278269285.1 histidine kinase Regulator
  MJ920_RS15020 (MJ920_14995) comX 3048658..3048837 (-) 180 WP_318010531.1 competence pheromone ComX -
  MJ920_RS15025 (MJ920_15000) comQ 3048791..3049777 (-) 987 WP_269321599.1 class 1 isoprenoid biosynthesis enzyme Regulator
  MJ920_RS15030 (MJ920_15005) degQ 3049908..3050048 (-) 141 WP_003152043.1 degradation enzyme regulation protein DegQ Regulator
  MJ920_RS15035 (MJ920_15010) - 3050513..3050854 (+) 342 WP_173612844.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24271.68 Da        Isoelectric Point: 4.9953

>NTDB_id=658203 MJ920_RS15010 WP_003152052.1 3045610..3046254(-) (comA) [Bacillus velezensis strain YC_89]
MKKILVIDDHPAVMEGTKTILETDTNLSVDCLSPDASEQFVLRHDFSAYDLILMDLNLGDDISGIELSKKILKENPLCKI
IVYTGYEVEDYFEESIRAGLHGAISKTESKEKIMQYIYHVLNGQILVDFSYFKQLMTQQKTKTSSSPQSEQDRLTPRERH
ILQEVEKGLTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDNVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=658203 MJ920_RS15010 WP_003152052.1 3045610..3046254(-) (comA) [Bacillus velezensis strain YC_89]
ATGAAAAAGATACTAGTGATTGATGATCATCCGGCTGTCATGGAGGGCACCAAGACGATTCTGGAAACGGACACGAATCT
TTCTGTCGATTGCCTTAGTCCTGATGCCAGTGAACAATTCGTTCTCCGGCATGATTTTTCAGCTTACGATCTCATATTAA
TGGATTTAAATCTGGGTGATGACATCAGCGGCATAGAGCTTTCCAAGAAAATCTTAAAAGAGAATCCTCTCTGCAAAATC
ATTGTCTACACAGGCTATGAGGTTGAAGATTATTTTGAAGAATCCATCCGCGCGGGCCTGCATGGCGCCATCAGCAAAAC
CGAATCTAAAGAGAAAATCATGCAATACATATATCATGTGCTGAACGGACAGATTTTAGTTGATTTCTCCTATTTCAAAC
AGCTGATGACCCAGCAAAAAACAAAAACGTCTTCTTCCCCTCAAAGTGAGCAGGATCGGTTAACCCCGAGAGAGCGCCAT
ATTCTCCAAGAGGTCGAAAAAGGTTTGACCAATCAGGAAATCGCAGATGCGCTTCACTTAAGCAAGCGGTCGATTGAATA
CAGCCTGACATCCATTTTTAATAAGCTGAATGTCGGCTCCCGAACTGAAGCGGTGCTGATCGCCAAGTCAGATAACGTAC
TATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-117)

Bacterial regulatory proteins, luxR family (GerE)

(153-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A3KLB8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

86.449

100

0.864