Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   MS6_RS05445 Genome accession   NZ_AP014524
Coordinates   1156533..1157957 (-) Length   474 a.a.
NCBI ID   WP_001183684.1    Uniprot ID   -
Organism   Vibrio cholerae MS6     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1151533..1162957
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MS6_RS05420 (MS6_1012) purT 1152042..1153217 (-) 1176 WP_000468082.1 phosphoribosylglycinamide formyltransferase 2 -
  MS6_RS05425 (MS6_1013) - 1153371..1154246 (-) 876 WP_017686276.1 AEC family transporter -
  MS6_RS05430 (MS6_1014) cdd 1154405..1155292 (-) 888 WP_017686275.1 cytidine deaminase -
  MS6_RS05435 (MS6_1015) - 1155462..1156136 (-) 675 WP_000266239.1 LrgB family protein -
  MS6_RS05440 (MS6_1016) - 1156127..1156501 (-) 375 WP_001881007.1 CidA/LrgA family protein -
  MS6_RS05445 (MS6_1017) sbcB 1156533..1157957 (-) 1425 WP_001183684.1 exodeoxyribonuclease I Machinery gene
  MS6_RS05450 (MS6_1018) - 1158101..1159474 (-) 1374 WP_000117954.1 L-cystine transporter -
  MS6_RS05455 (MS6_1019) msrB 1159820..1160266 (+) 447 WP_000935882.1 peptide-methionine (R)-S-oxide reductase MsrB -
  MS6_RS05460 (MS6_1021) cobT 1160877..1161902 (+) 1026 WP_000887084.1 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase -
  MS6_RS05465 (MS6_1022) - 1161902..1162687 (+) 786 WP_000718969.1 adenosylcobinamide-GDP ribazoletransferase -

Sequence

Protein


Download         Length: 474 a.a.        Molecular weight: 54453.84 Da        Isoelectric Point: 5.8781

>NTDB_id=65818 MS6_RS05445 WP_001183684.1 1156533..1157957(-) (sbcB) [Vibrio cholerae MS6]
MQQEHQPTFFFFDYETWGVNPAKDRPSQFAGVRTDMDFNIIGEPLVIYCQLPNDYLPAPEAALITGITPQKANSQGLAEP
EFIARIHAELSTPNTISLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQHGNSRWDLLDVLRACHALRPEGIEWPENDDGFT
SFKLEHLSVANGIEHSNAHDAMADVIATIELAKKVKAAQPKLFDYFFTMRHKRKLTELIDIVNQTPLMHVSGMLGRERHY
TSWIVPIAWHPTNQNAVIVVDLGKDPQPLLELDAETLQARLYTRYEDLAPDELPVPVKLVHLNKCPILAPAKTLTAENAQ
KIGIDREQCLAHLNVIRQHPEIREKLVTVFSQEPEFNQESDVDSQLYAGFFSPADRAAMEIIRTTAPENLGSLAIQVADK
RIEPLLFRYRARHYPHTLTDAEQRRWAAHCRDYFERNLEGYMLNLENLVHEHQADPKKMAILKSVYHYVEKLAC

Nucleotide


Download         Length: 1425 bp        

>NTDB_id=65818 MS6_RS05445 WP_001183684.1 1156533..1157957(-) (sbcB) [Vibrio cholerae MS6]
ATGCAGCAAGAACACCAGCCCACATTCTTCTTCTTTGACTACGAGACTTGGGGAGTCAATCCCGCCAAAGATCGTCCTAG
TCAGTTTGCGGGTGTGCGTACCGATATGGACTTCAACATCATCGGTGAGCCTTTGGTGATTTACTGTCAACTGCCCAACG
ACTATTTGCCCGCCCCAGAGGCCGCATTGATCACAGGGATCACTCCTCAAAAAGCCAATAGCCAAGGTCTCGCGGAGCCC
GAATTTATCGCGCGTATTCATGCTGAGCTCTCCACACCCAATACCATCAGCCTAGGCTATAACAGCATACGTTTTGATGA
TGAAGTGACGCGCTACACCTGCTATCGCAACTTTATCGACCCCTATGCTTGGAGCTGGCAACACGGCAATTCTCGTTGGG
ATCTGCTGGATGTGCTTCGCGCGTGTCATGCTTTGCGTCCTGAAGGTATTGAGTGGCCGGAAAATGATGACGGCTTTACC
AGCTTTAAACTGGAACATCTTTCTGTTGCCAACGGCATTGAGCACAGCAACGCGCACGATGCGATGGCCGATGTGATTGC
CACCATTGAACTGGCGAAAAAAGTCAAAGCCGCGCAGCCGAAATTGTTCGACTACTTCTTCACTATGCGCCACAAACGCA
AGCTGACAGAACTGATTGATATTGTGAACCAAACTCCGCTGATGCATGTTTCTGGCATGCTTGGGCGTGAGCGCCACTAC
ACCAGCTGGATTGTGCCGATTGCTTGGCATCCGACCAATCAAAATGCGGTGATTGTGGTGGATTTGGGTAAAGACCCTCA
GCCGCTGCTGGAGCTCGATGCCGAAACGCTGCAAGCGCGTCTCTATACGCGGTATGAAGACCTAGCGCCGGATGAGCTAC
CAGTACCCGTGAAATTGGTACATCTCAATAAATGCCCTATTCTAGCTCCGGCCAAAACCTTGACCGCAGAAAATGCACAA
AAGATTGGTATTGACCGCGAACAGTGTCTCGCGCACTTGAATGTGATTCGTCAACACCCCGAGATTCGTGAAAAGCTGGT
GACGGTATTTAGCCAAGAGCCCGAATTTAACCAAGAGAGTGATGTGGATAGCCAACTCTATGCCGGCTTTTTCTCCCCAG
CCGATCGCGCGGCGATGGAGATCATCCGCACCACTGCACCGGAGAATCTGGGCAGCTTAGCGATACAGGTGGCCGATAAG
CGCATTGAACCACTGCTGTTTCGTTATCGTGCGCGCCATTATCCCCATACCTTAACCGATGCCGAGCAACGCCGCTGGGC
AGCGCATTGTCGTGACTATTTCGAGCGCAATCTAGAAGGTTATATGTTGAATTTGGAAAATCTGGTGCATGAACATCAAG
CTGATCCAAAGAAAATGGCGATTTTAAAATCCGTCTACCATTACGTGGAAAAACTCGCTTGCTAA

Domains

Predicted by InterproScan.

Exonuclease C-terminal (Exonuc_X-T_C)

(210-470)

Exonuclease (RNase_T)

(11-191)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

99.156

100

0.992

Multiple sequence alignment