Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   MJ595_RS13155 Genome accession   NZ_CP092489
Coordinates   2987842..2988717 (-) Length   291 a.a.
NCBI ID   WP_263078372.1    Uniprot ID   -
Organism   Endozoicomonas sp. Mp262     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2982842..2993717
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MJ595_RS13135 - 2982857..2984941 (+) 2085 WP_263078368.1 EAL domain-containing protein -
  MJ595_RS13140 - 2985089..2986711 (+) 1623 WP_263078369.1 NAD+ synthase -
  MJ595_RS13145 - 2986844..2987089 (+) 246 WP_263078370.1 CcdB family protein -
  MJ595_RS13150 coaE 2987219..2987842 (-) 624 WP_263078371.1 dephospho-CoA kinase -
  MJ595_RS13155 pilD 2987842..2988717 (-) 876 WP_263078372.1 A24 family peptidase Machinery gene
  MJ595_RS13160 - 2988992..2989402 (-) 411 WP_263078373.1 DUF350 domain-containing protein -
  MJ595_RS13165 - 2989544..2990242 (-) 699 WP_263078374.1 PspA/IM30 family protein -
  MJ595_RS13170 - 2990510..2992297 (-) 1788 WP_263078375.1 SPFH domain-containing protein -
  MJ595_RS13175 - 2992316..2992696 (-) 381 WP_263322506.1 YqiJ family protein -

Sequence

Protein


Download         Length: 291 a.a.        Molecular weight: 32369.64 Da        Isoelectric Point: 7.1140

>NTDB_id=658056 MJ595_RS13155 WP_263078372.1 2987842..2988717(-) (pilD) [Endozoicomonas sp. Mp262]
MTLPDLLGHQPFYLFFLFSIVVGLIVGSFLNVVIHRLPIMLEKQWHKESKITLFPDCEEEDSAPYNLAIPSSHCPQCHHK
IRPWENIPIISYLLLKGRCSSCKTRISIRYPAIELITALLTLTICWKFGFSAEALAYCLFAWSLLALAMIDFDTKLLPDA
ITLPLIWAGLIVNSFDTAVSLHEALWGAVAGYLSLWSVYWLFKLVTGKEGMGYGDFKLLAALGAWLGWSMLPMIILLSSL
AGTAIALILIALKLHQRSNPIPFGPYLALAGLIALMGGDQIIQTYVQMMGI

Nucleotide


Download         Length: 876 bp        

>NTDB_id=658056 MJ595_RS13155 WP_263078372.1 2987842..2988717(-) (pilD) [Endozoicomonas sp. Mp262]
ATGACGCTGCCTGACTTGCTGGGGCACCAGCCTTTTTATCTGTTTTTTTTATTTTCCATTGTTGTGGGCCTGATCGTTGG
CAGTTTTCTTAATGTTGTGATTCACCGGCTTCCCATTATGCTGGAAAAGCAGTGGCACAAGGAAAGTAAAATCACTCTTT
TCCCGGACTGTGAAGAGGAGGACTCTGCCCCTTATAACCTGGCTATTCCCTCTTCACACTGTCCCCAGTGTCATCATAAA
ATTCGGCCCTGGGAAAATATTCCCATTATCAGTTACCTCCTGCTCAAAGGTCGCTGTTCTTCCTGTAAAACCCGTATTTC
AATACGCTACCCGGCTATTGAACTTATTACTGCTTTACTGACACTGACCATTTGCTGGAAGTTTGGTTTTTCTGCGGAAG
CACTGGCCTACTGCCTTTTTGCCTGGAGCCTGCTGGCGCTGGCCATGATTGACTTTGATACCAAGCTATTGCCTGATGCC
ATTACCCTGCCCCTGATTTGGGCGGGGCTGATAGTTAACAGTTTTGATACTGCGGTTTCCCTCCATGAGGCCCTTTGGGG
TGCGGTGGCAGGCTATCTATCCCTGTGGTCTGTATACTGGCTATTTAAACTGGTAACAGGAAAGGAGGGCATGGGCTACG
GTGACTTTAAACTACTGGCCGCCCTGGGTGCCTGGCTTGGCTGGAGTATGCTGCCAATGATCATTCTGCTTTCGTCGTTA
GCAGGTACGGCTATCGCCCTGATTTTGATTGCGCTGAAGTTACACCAGCGCTCAAATCCTATACCCTTTGGTCCCTATCT
CGCCCTGGCTGGATTGATTGCCTTAATGGGGGGAGATCAGATTATCCAGACCTATGTTCAAATGATGGGAATTTAA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(139-246)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(21-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio campbellii strain DS40M4

52.364

94.502

0.495
  pilD Vibrio cholerae strain A1552

52.364

94.502

0.495
  pilD Acinetobacter nosocomialis M2

52.256

91.409

0.478
  pilD Acinetobacter baumannii D1279779

51.88

91.409

0.474
  pilD Neisseria gonorrhoeae MS11

49.042

89.691

0.44