Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   OG438_RS20465 Genome accession   NZ_CP108291
Coordinates   4663320..4663919 (-) Length   199 a.a.
NCBI ID   WP_405924507.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00035     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4658320..4668919
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG438_RS20430 (OG438_20405) - 4658759..4658944 (-) 186 WP_405924503.1 DUF397 domain-containing protein -
  OG438_RS20435 (OG438_20410) - 4658941..4659753 (-) 813 WP_326721620.1 helix-turn-helix transcriptional regulator -
  OG438_RS20440 (OG438_20415) - 4659838..4660158 (+) 321 WP_405924504.1 hypothetical protein -
  OG438_RS20445 (OG438_20420) - 4660263..4660676 (-) 414 WP_326721622.1 SsgA family sporulation/cell division regulator -
  OG438_RS20450 (OG438_20425) - 4660807..4662339 (+) 1533 WP_405924505.1 sigma-70 family RNA polymerase sigma factor -
  OG438_RS20455 (OG438_20430) - 4662398..4662598 (-) 201 WP_405924506.1 hypothetical protein -
  OG438_RS20460 (OG438_20435) - 4662668..4663327 (-) 660 WP_266457438.1 DUF5063 domain-containing protein -
  OG438_RS20465 (OG438_20440) recR 4663320..4663919 (-) 600 WP_405924507.1 recombination mediator RecR Machinery gene
  OG438_RS20470 (OG438_20445) - 4664038..4664382 (-) 345 WP_266457444.1 YbaB/EbfC family nucleoid-associated protein -
  OG438_RS20475 (OG438_20450) - 4664643..4665452 (+) 810 WP_405924508.1 SLATT domain-containing protein -
  OG438_RS20480 (OG438_20455) - 4665573..4666976 (-) 1404 WP_405924509.1 M20/M25/M40 family metallo-hydrolase -
  OG438_RS20485 (OG438_20460) - 4667204..4667764 (-) 561 Protein_4068 substrate-binding domain-containing protein -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 21838.32 Da        Isoelectric Point: 4.9908

>NTDB_id=658052 OG438_RS20465 WP_405924507.1 4663320..4663919(-) (recR) [Streptomyces sp. NBC_00035]
MYEGVVQDLIDELGRLPGVGPKSAQRIAFHILQAEPTDVRRLVQCLMEVKAKVRFCATCGNVAQEELCNICRDPRRDLSV
ICVVEEPKDVVAVERTREFRGKYHVLGGAISPIEGVGPDDLRIRELLARLADGVVTELILATDPNLEGEATATYLARMIK
PMGLKVTRLASGLPVGGDLEYADEVTLGRAFEGRRLLDV

Nucleotide


Download         Length: 600 bp        

>NTDB_id=658052 OG438_RS20465 WP_405924507.1 4663320..4663919(-) (recR) [Streptomyces sp. NBC_00035]
TTGTACGAAGGCGTGGTCCAGGACCTCATCGACGAGTTGGGGCGGTTGCCCGGCGTCGGTCCCAAGAGCGCGCAGCGGAT
CGCCTTCCACATCCTCCAGGCCGAGCCGACGGACGTCCGCCGTCTCGTGCAGTGCCTGATGGAGGTCAAGGCGAAGGTCC
GCTTCTGCGCGACCTGCGGGAACGTCGCGCAGGAAGAGCTGTGCAACATCTGCCGCGACCCGCGCCGCGACCTGTCGGTG
ATCTGCGTGGTGGAGGAACCGAAGGACGTCGTGGCGGTCGAGCGCACCCGCGAGTTCCGGGGCAAGTACCACGTCCTGGG
CGGCGCGATCAGCCCGATCGAGGGCGTCGGCCCGGACGACCTGCGCATAAGAGAGCTCCTGGCCCGTCTCGCCGACGGTG
TGGTCACGGAACTGATCCTCGCCACGGACCCGAACCTGGAGGGCGAGGCCACGGCCACGTACCTCGCCCGCATGATCAAG
CCCATGGGCCTCAAGGTCACCCGCCTGGCCAGCGGCCTCCCGGTGGGCGGCGACCTGGAATACGCGGACGAGGTCACGCT
CGGTCGCGCCTTCGAGGGGAGACGACTCCTAGATGTCTGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH)

(2-27)

Toprim domain (Toprim_4)

(79-170)

RecR protein (RecR_ZnF)

(38-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

54.592

98.492

0.538
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

53.093

97.487

0.518
  recR Streptococcus pneumoniae R6

46.392

97.487

0.452