Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OG374_RS30095 Genome accession   NZ_CP108287
Coordinates   6466262..6466894 (-) Length   210 a.a.
NCBI ID   WP_202199373.1    Uniprot ID   A0ABQ3TA54
Organism   Streptomyces sp. NBC_00040     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 6461262..6471894
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG374_RS30085 (OG374_29935) - 6462333..6463085 (+) 753 WP_252309922.1 thioesterase II family protein -
  OG374_RS30090 (OG374_29940) - 6463343..6466213 (+) 2871 WP_266816864.1 LuxR family transcriptional regulator -
  OG374_RS30095 (OG374_29945) vraR 6466262..6466894 (-) 633 WP_202199373.1 response regulator transcription factor Regulator
  OG374_RS30100 (OG374_29950) - 6466884..6468134 (-) 1251 WP_237403855.1 sensor histidine kinase -
  OG374_RS30105 (OG374_29955) - 6468271..6468900 (+) 630 WP_308296085.1 hypothetical protein -
  OG374_RS30110 (OG374_29960) - 6469032..6469460 (+) 429 WP_405815614.1 PH domain-containing protein -
  OG374_RS30115 (OG374_29965) - 6469457..6471001 (+) 1545 WP_252309924.1 PH domain-containing protein -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 22245.67 Da        Isoelectric Point: 5.7471

>NTDB_id=657985 OG374_RS30095 WP_202199373.1 6466262..6466894(-) (vraR) [Streptomyces sp. NBC_00040]
MSTDQTIGVMLVDDHPVVREGLSSMLQSADGVSVVGQAGSGEEAIAMVARLAPDIVLLDLQMGGMDGVETTGHLLRAAPA
TKVVIVTTYESDTDILRAVEAGAAGYLLKGSTRDDLVQAVKAAARGETVLTPSLAPKLFRARVVERPVLSDREREVLQLV
SLGLTNADIGRRLFISEATVKTHLLRSFKKLSVSDRTAAVITALERGLLS

Nucleotide


Download         Length: 633 bp        

>NTDB_id=657985 OG374_RS30095 WP_202199373.1 6466262..6466894(-) (vraR) [Streptomyces sp. NBC_00040]
ATGAGCACTGACCAGACGATCGGCGTGATGCTGGTCGACGACCATCCGGTCGTCCGGGAGGGTCTGAGCTCGATGCTGCA
GTCCGCCGACGGCGTGAGCGTCGTCGGGCAGGCCGGCTCGGGCGAGGAGGCGATCGCGATGGTCGCCAGGCTGGCTCCCG
ACATCGTCCTGCTCGACCTGCAGATGGGCGGCATGGACGGGGTGGAGACCACCGGCCACCTGCTGCGCGCCGCTCCGGCC
ACCAAGGTGGTGATCGTGACGACGTACGAGAGCGACACCGACATCCTGCGGGCCGTGGAGGCGGGCGCGGCGGGCTACCT
GCTCAAGGGCAGCACGCGCGACGACCTGGTGCAGGCGGTGAAGGCGGCGGCCCGCGGCGAGACGGTCCTGACGCCGTCGC
TGGCCCCCAAACTGTTCCGGGCCCGGGTGGTGGAACGGCCCGTGCTGTCGGACCGTGAACGCGAGGTGCTCCAGCTGGTC
AGCCTCGGGCTGACCAACGCGGACATCGGCCGCCGCCTGTTCATCAGCGAGGCGACGGTGAAGACGCATCTGCTGCGGTC
GTTCAAGAAGCTGTCGGTCTCGGACCGGACCGCAGCGGTGATCACGGCACTGGAGCGCGGCCTGCTGTCCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(9-121)

Bacterial regulatory proteins, luxR family (GerE)

(148-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

40.865

99.048

0.405
  degU Bacillus subtilis subsp. subtilis str. 168

34.821

100

0.371