Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   OG374_RS23720 Genome accession   NZ_CP108287
Coordinates   5083823..5085235 (-) Length   470 a.a.
NCBI ID   WP_202200348.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00040     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5078823..5090235
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG374_RS23695 (OG374_23560) - 5079037..5079669 (-) 633 WP_202203754.1 hypothetical protein -
  OG374_RS23700 (OG374_23565) - 5079705..5080265 (-) 561 WP_030010715.1 SigE family RNA polymerase sigma factor -
  OG374_RS23705 (OG374_23570) - 5080451..5081434 (-) 984 WP_389801273.1 A/G-specific adenine glycosylase -
  OG374_RS23710 (OG374_23575) - 5081662..5082468 (+) 807 WP_398428805.1 hypothetical protein -
  OG374_RS23715 (OG374_23580) disA 5082487..5083611 (-) 1125 WP_202200349.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  OG374_RS23720 (OG374_23585) radA/sms 5083823..5085235 (-) 1413 WP_202200348.1 DNA repair protein RadA Machinery gene
  OG374_RS23725 (OG374_23590) - 5085454..5087217 (+) 1764 WP_252309668.1 BACON domain-containing protein -
  OG374_RS23730 (OG374_23595) - 5087250..5088119 (-) 870 WP_202200346.1 hypothetical protein -
  OG374_RS23735 (OG374_23600) - 5088183..5089121 (+) 939 WP_202200345.1 Ppx/GppA phosphatase family protein -

Sequence

Protein


Download         Length: 470 a.a.        Molecular weight: 49289.47 Da        Isoelectric Point: 8.0046

>NTDB_id=657966 OG374_RS23720 WP_202200348.1 5083823..5085235(-) (radA/sms) [Streptomyces sp. NBC_00040]
MAARTARSSAKDRPSYRCTDCGWTTAKWLGRCPECQAWGTVEEMGAPAVRTTAAGRVSTAAVPIAQVDGRTATARSTGVD
ELDRVLGGGLVPGAVVLLAGEPGVGKSTLLLDVAAKAASDEHRTLYVTGEESASQVRLRADRINALNDHLYLAAETDLSA
VLGHLDAVKPSLLILDSVQTVASPEIDGAPGGMAQVREVAGALIRASKERGMATLLVGHVTKDGAIAGPRLLEHLVDVVL
SFEGDRHARLRLVRGIKNRYGATDEVGCFELHDEGITGLADPSGLFLTRRAEAVPGTCLTVTLEGKRPLVAEVQALTVDS
QIPSPRRTTSGLETSRVSMMLAVLEQRGRITALGKRDIYSATVGGVKLTEPAADLAIALALASAASDVPLPKNLVAIGEV
GLAGEVRRVTGVQRRLAEAHRLGFTHALVPADPGKVPAGMKVIEVADMGDALRVLPRGRSRTPARERSAE

Nucleotide


Download         Length: 1413 bp        

>NTDB_id=657966 OG374_RS23720 WP_202200348.1 5083823..5085235(-) (radA/sms) [Streptomyces sp. NBC_00040]
ATGGCTGCCCGCACCGCTCGTTCATCCGCCAAGGACCGGCCGTCCTACCGCTGTACCGACTGCGGCTGGACGACCGCGAA
GTGGCTCGGCCGCTGTCCCGAATGCCAGGCCTGGGGCACGGTCGAGGAGATGGGCGCGCCCGCCGTGCGGACCACAGCCG
CCGGCCGGGTCTCGACCGCCGCCGTGCCGATCGCGCAGGTCGACGGCCGGACCGCGACCGCCCGCAGCACGGGCGTGGAC
GAACTGGACCGCGTCCTCGGCGGCGGGCTCGTGCCCGGCGCCGTCGTCCTGCTCGCGGGCGAGCCCGGCGTCGGCAAGTC
GACCCTGCTGCTGGACGTCGCCGCGAAGGCGGCGAGCGACGAGCACCGCACGCTGTACGTGACGGGCGAGGAGTCGGCGA
GCCAGGTGCGCCTGCGGGCCGACCGGATCAACGCGCTGAACGACCACCTCTACCTGGCTGCCGAGACGGATCTGTCCGCC
GTCCTCGGGCATCTCGACGCCGTGAAGCCCTCCCTGCTGATCCTGGACTCCGTACAGACCGTCGCCTCCCCCGAGATCGA
CGGCGCGCCCGGCGGCATGGCCCAGGTGCGGGAGGTGGCCGGAGCGCTGATCCGGGCCTCCAAGGAGCGCGGGATGGCCA
CCCTCCTCGTCGGCCACGTGACCAAGGACGGGGCCATCGCCGGTCCCCGCCTGCTGGAGCACCTCGTCGACGTCGTGCTG
AGCTTCGAGGGCGACCGGCACGCCCGGCTGCGCCTGGTGCGCGGCATCAAGAACCGGTACGGGGCCACCGACGAGGTCGG
CTGCTTCGAGCTGCACGACGAGGGGATCACCGGGCTCGCCGACCCGAGCGGGCTGTTCCTGACCCGGCGCGCCGAGGCCG
TTCCGGGCACCTGCCTGACGGTGACCCTGGAGGGGAAGCGTCCGCTGGTCGCCGAGGTGCAGGCGCTGACCGTGGACTCG
CAGATCCCCTCCCCCCGGCGGACGACCTCGGGCCTGGAGACCTCGCGCGTGTCGATGATGCTGGCGGTGCTGGAGCAGCG
CGGCCGGATCACGGCGCTCGGCAAGCGCGACATCTACAGCGCCACCGTGGGCGGCGTGAAGCTCACCGAGCCGGCCGCCG
ACCTGGCGATCGCGCTCGCGCTGGCGTCCGCCGCCAGTGACGTCCCGCTGCCGAAGAACCTCGTCGCGATCGGTGAGGTC
GGCCTGGCCGGCGAGGTGCGGCGGGTGACCGGTGTGCAGCGGCGGCTCGCGGAGGCGCACCGGCTCGGGTTCACGCACGC
GCTGGTCCCGGCGGATCCGGGGAAGGTGCCGGCCGGTATGAAGGTCATCGAGGTGGCCGACATGGGCGACGCGCTACGGG
TGTTGCCGCGCGGCCGTTCCCGTACCCCCGCCAGGGAGCGGTCGGCGGAGTAG

Domains

Predicted by InterProScan.

Subunit ChlI of Mg-chelatase (ChlI)

(372-431)

AAA domain (AAA_25)

(84-224)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(16-43)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

44.371

96.383

0.428
  radA Streptococcus mitis SK321

43.077

96.809

0.417
  radA Streptococcus mitis NCTC 12261

43.077

96.809

0.417
  radA Streptococcus pneumoniae TIGR4

43.142

96.17

0.415
  radA Streptococcus pneumoniae R6

43.142

96.17

0.415
  radA Streptococcus pneumoniae Rx1

43.142

96.17

0.415
  radA Streptococcus pneumoniae D39

43.142

96.17

0.415