Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   OG374_RS22890 Genome accession   NZ_CP108287
Coordinates   4903749..4904348 (+) Length   199 a.a.
NCBI ID   WP_030010802.1    Uniprot ID   A0ABS4LCH5
Organism   Streptomyces sp. NBC_00040     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4898749..4909348
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG374_RS22865 (OG374_22730) - 4899256..4900617 (+) 1362 WP_202200514.1 aspartate aminotransferase family protein -
  OG374_RS22870 (OG374_22735) - 4900793..4901458 (+) 666 WP_202200513.1 GntR family transcriptional regulator -
  OG374_RS22875 (OG374_22740) - 4901644..4902294 (+) 651 WP_202200512.1 hypothetical protein -
  OG374_RS22880 (OG374_22745) - 4902351..4903097 (-) 747 WP_202200511.1 SLATT domain-containing protein -
  OG374_RS22885 (OG374_22750) - 4903367..4903711 (+) 345 WP_094744798.1 YbaB/EbfC family nucleoid-associated protein -
  OG374_RS22890 (OG374_22755) recR 4903749..4904348 (+) 600 WP_030010802.1 recombination mediator RecR Machinery gene
  OG374_RS22895 (OG374_22760) - 4904341..4904988 (+) 648 WP_202200510.1 DUF5063 domain-containing protein -
  OG374_RS22900 (OG374_22765) - 4905140..4906414 (+) 1275 WP_030726444.1 aspartate kinase -
  OG374_RS22905 (OG374_22770) - 4906411..4907484 (+) 1074 WP_202200509.1 aspartate-semialdehyde dehydrogenase -
  OG374_RS22910 (OG374_22775) - 4907731..4908438 (+) 708 WP_202203769.1 SigE family RNA polymerase sigma factor -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 21843.18 Da        Isoelectric Point: 5.0142

>NTDB_id=657961 OG374_RS22890 WP_030010802.1 4903749..4904348(+) (recR) [Streptomyces sp. NBC_00040]
MYEGVVQDLIDELGRLPGVGPKSAQRIAFHILQAEPTDVRRLAHALLEVKDKVRFCAVCGNVAQEERCGICRDPRRDTTV
ICVVEEPKDVVAIERTREFRGKYHVLGGAISPIEGVGPDDLRIRELLARLADGEVTELILATDPNLEGEATATYLARMIK
PMGLKVTRLASGLPVGGDLEYADEVTLGRAFEGRRLLDV

Nucleotide


Download         Length: 600 bp        

>NTDB_id=657961 OG374_RS22890 WP_030010802.1 4903749..4904348(+) (recR) [Streptomyces sp. NBC_00040]
TTGTACGAAGGCGTGGTTCAGGACCTGATCGACGAACTGGGCAGGCTGCCCGGCGTCGGGCCCAAGAGCGCGCAGCGGAT
CGCCTTCCACATCCTGCAGGCCGAGCCCACCGACGTCCGCCGCCTCGCGCACGCGCTGCTGGAGGTCAAGGACAAGGTCC
GGTTCTGCGCGGTGTGCGGGAACGTGGCGCAGGAGGAGCGGTGCGGCATCTGCCGCGATCCGCGCCGGGACACCACGGTC
ATCTGTGTCGTCGAGGAGCCGAAGGACGTCGTCGCGATCGAGCGGACGCGCGAGTTCCGGGGGAAGTACCACGTCCTCGG
CGGCGCGATCAGCCCGATCGAGGGCGTCGGCCCGGACGACCTGCGGATCCGCGAGCTGCTGGCGCGCCTCGCGGACGGCG
AGGTGACCGAGCTGATCCTCGCCACCGACCCGAACCTGGAGGGCGAGGCGACCGCCACCTACCTCGCCCGCATGATCAAG
CCCATGGGCCTGAAGGTCACCCGCCTGGCCAGCGGACTCCCCGTCGGGGGAGATCTGGAGTATGCGGACGAGGTCACGCT
CGGGCGGGCCTTTGAAGGAAGGCGACTTCTCGATGTCTGA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(38-77)

Toprim domain (Toprim_4)

(80-170)

Helix-hairpin-helix motif (HHH)

(2-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

55.612

98.492

0.548
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

54.639

97.487

0.533
  recR Streptococcus pneumoniae R6

48.454

97.487

0.472