Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | MKD39_RS04165 | Genome accession | NZ_CP092478 |
| Coordinates | 863702..864100 (+) | Length | 132 a.a. |
| NCBI ID | WP_011275249.1 | Uniprot ID | A0A5B2YX53 |
| Organism | Staphylococcus haemolyticus strain CGMH-SH51 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 858702..869100
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| MKD39_RS04135 (MKD39_04130) | atpD | 858849..860261 (+) | 1413 | WP_011275243.1 | F0F1 ATP synthase subunit beta | - |
| MKD39_RS04140 (MKD39_04135) | - | 860282..860683 (+) | 402 | WP_011275244.1 | F0F1 ATP synthase subunit epsilon | - |
| MKD39_RS04145 (MKD39_04140) | - | 860811..861044 (+) | 234 | WP_011275245.1 | DUF1146 family protein | - |
| MKD39_RS04150 (MKD39_04145) | murA | 861149..862414 (+) | 1266 | WP_033079610.1 | UDP-N-acetylglucosamine 1-carboxyvinyltransferase | - |
| MKD39_RS04155 (MKD39_04150) | fabZ | 862454..862891 (+) | 438 | WP_011275247.1 | 3-hydroxyacyl-ACP dehydratase FabZ | - |
| MKD39_RS04160 (MKD39_04155) | - | 863071..863514 (-) | 444 | WP_011275248.1 | YwpF-like family protein | - |
| MKD39_RS04165 (MKD39_04160) | ssb | 863702..864100 (+) | 399 | WP_011275249.1 | single-stranded DNA-binding protein | Machinery gene |
| MKD39_RS04170 (MKD39_04165) | - | 864439..865146 (+) | 708 | WP_011275250.1 | transglycosylase family protein | - |
| MKD39_RS04175 (MKD39_04170) | tenA | 865434..866123 (+) | 690 | WP_011275251.1 | thiaminase II | - |
| MKD39_RS04180 (MKD39_04175) | thiD | 866116..866937 (+) | 822 | WP_016931211.1 | bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase | - |
| MKD39_RS04185 (MKD39_04180) | thiM | 866930..867721 (+) | 792 | WP_011275253.1 | hydroxyethylthiazole kinase | - |
| MKD39_RS04190 (MKD39_04185) | thiE | 867723..868361 (+) | 639 | WP_011275254.1 | thiamine phosphate synthase | - |
Sequence
Protein
Download Length: 132 a.a. Molecular weight: 15141.05 Da Isoelectric Point: 4.7942
>NTDB_id=657930 MKD39_RS04165 WP_011275249.1 863702..864100(+) (ssb) [Staphylococcus haemolyticus strain CGMH-SH51]
MLNKIVIVGRLTKKAQIFENEEVKIATFCVATERNYKDENNEIACDYIFCKAFGKTATNIESYTDQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSKNDNILPNTSYDEDAYSFDHLEVIDVN
MLNKIVIVGRLTKKAQIFENEEVKIATFCVATERNYKDENNEIACDYIFCKAFGKTATNIESYTDQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSKNDNILPNTSYDEDAYSFDHLEVIDVN
Nucleotide
Download Length: 399 bp
>NTDB_id=657930 MKD39_RS04165 WP_011275249.1 863702..864100(+) (ssb) [Staphylococcus haemolyticus strain CGMH-SH51]
ATGCTAAATAAAATTGTGATAGTAGGTCGATTGACCAAAAAGGCACAAATATTTGAAAACGAGGAGGTGAAAATAGCTAC
GTTCTGTGTTGCAACTGAACGTAATTATAAAGATGAAAATAATGAAATAGCTTGTGATTATATTTTTTGTAAGGCATTTG
GTAAAACAGCAACAAATATAGAATCATATACAGACCAAGGCACTTTAGTTGGTATTACAGGACAAATGAGATCTCGTAAG
TACGATAAAGATGGCCAAACGCACTTTGTGACTGAATTATATGTTGAAACAATTAAATTTATGTCCCCTAAATCTAAAAA
TGATAATATTCTTCCTAACACCTCATATGATGAAGACGCTTATTCCTTTGATCACCTTGAAGTGATTGATGTTAACTAA
ATGCTAAATAAAATTGTGATAGTAGGTCGATTGACCAAAAAGGCACAAATATTTGAAAACGAGGAGGTGAAAATAGCTAC
GTTCTGTGTTGCAACTGAACGTAATTATAAAGATGAAAATAATGAAATAGCTTGTGATTATATTTTTTGTAAGGCATTTG
GTAAAACAGCAACAAATATAGAATCATATACAGACCAAGGCACTTTAGTTGGTATTACAGGACAAATGAGATCTCGTAAG
TACGATAAAGATGGCCAAACGCACTTTGTGACTGAATTATATGTTGAAACAATTAAATTTATGTCCCCTAAATCTAAAAA
TGATAATATTCTTCCTAACACCTCATATGATGAAGACGCTTATTCCTTTGATCACCTTGAAGTGATTGATGTTAACTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Staphylococcus aureus N315 |
75.573 |
99.242 |
0.75 |
| ssb | Staphylococcus aureus MW2 |
74.809 |
99.242 |
0.742 |