Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   MKD48_RS06105 Genome accession   NZ_CP092475
Coordinates   1166632..1167318 (+) Length   228 a.a.
NCBI ID   WP_075583650.1    Uniprot ID   -
Organism   Staphylococcus aureus strain P5     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1161632..1172318
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MKD48_RS06070 yqeH 1162159..1163259 (+) 1101 WP_001280141.1 ribosome biogenesis GTPase YqeH -
  MKD48_RS06075 aroE 1163273..1164079 (+) 807 WP_000666749.1 shikimate dehydrogenase -
  MKD48_RS06080 yhbY 1164083..1164373 (+) 291 WP_000955235.1 ribosome assembly RNA-binding protein YhbY -
  MKD48_RS06085 nadD 1164376..1164945 (+) 570 WP_000725167.1 nicotinate (nicotinamide) nucleotide adenylyltransferase -
  MKD48_RS06090 yqeK 1164935..1165519 (+) 585 WP_001019324.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  MKD48_RS06095 rsfS 1165520..1165873 (+) 354 WP_001088022.1 ribosome silencing factor -
  MKD48_RS06100 - 1165876..1166592 (+) 717 WP_000084824.1 class I SAM-dependent methyltransferase -
  MKD48_RS06105 comEA 1166632..1167318 (+) 687 WP_075583650.1 ComEA family DNA-binding protein Machinery gene
  MKD48_RS06110 - 1167410..1167871 (+) 462 WP_000439693.1 ComE operon protein 2 -
  MKD48_RS06115 comEC 1167876..1170077 (+) 2202 WP_180991665.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  MKD48_RS06120 holA 1170134..1171108 (+) 975 WP_001282562.1 DNA polymerase III subunit delta -
  MKD48_RS06125 rpsT 1171153..1171404 (-) 252 WP_001274017.1 30S ribosomal protein S20 -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25787.53 Da        Isoelectric Point: 9.6753

>NTDB_id=657895 MKD48_RS06105 WP_075583650.1 1166632..1167318(+) (comEA) [Staphylococcus aureus strain P5]
MVLLYQFLLRYKDFLTQWKLYIISAVVLIMVLIGFIFWRQDDYTSRNFENKDTALKQSTSENSSLSKLEDVQVKDGDNSK
NKGPVYVDVKGAVKHPNVYKMTSKDRVVDLLDKAQLLEDADVSQINLSEKLTDQKMIFIPHKGQKNVEPQIGVNSVHVKN
GNTNNTKVNLNTASVSELMSVPGVGQAKANAIVEYRNQQGAFQEIDDLKKVKGFGSKTFDKLKSYFTI

Nucleotide


Download         Length: 687 bp        

>NTDB_id=657895 MKD48_RS06105 WP_075583650.1 1166632..1167318(+) (comEA) [Staphylococcus aureus strain P5]
GTGGTTTTATTGTATCAATTTTTATTACGCTATAAAGATTTTTTAACTCAGTGGAAGTTATATATTATAAGTGCTGTTGT
TTTAATTATGGTATTAATTGGTTTTATATTCTGGAGACAAGATGATTATACTTCAAGAAATTTTGAAAATAAAGATACTG
CTCTGAAACAAAGCACTAGTGAAAATAGTAGTTTGTCCAAATTAGAAGATGTCCAGGTCAAAGATGGAGATAATTCCAAA
AATAAAGGTCCTGTATATGTCGATGTAAAAGGTGCTGTTAAACATCCTAATGTTTATAAAATGACATCTAAGGATAGAGT
AGTTGATTTACTTGATAAAGCACAATTATTGGAGGATGCAGATGTAAGTCAAATTAATTTGTCTGAAAAATTAACAGATC
AAAAAATGATTTTCATACCTCATAAAGGACAAAAGAATGTTGAACCACAAATTGGAGTAAACAGTGTGCATGTAAAAAAT
GGGAACACAAATAATACTAAAGTAAATTTAAATACCGCATCTGTATCAGAATTGATGTCTGTTCCTGGAGTAGGGCAAGC
TAAAGCTAATGCAATTGTTGAATATCGCAACCAACAAGGTGCATTTCAAGAAATTGACGATTTGAAAAAAGTAAAAGGTT
TTGGAAGTAAAACTTTTGATAAACTGAAATCTTATTTCACGATATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(164-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Staphylococcus aureus MW2

99.123

100

0.991
  comEA Staphylococcus aureus N315

98.246

100

0.982