Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   MKD48_RS03270 Genome accession   NZ_CP092475
Coordinates   652836..653231 (+) Length   131 a.a.
NCBI ID   WP_000932694.1    Uniprot ID   -
Organism   Staphylococcus aureus strain P5     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 647836..658231
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MKD48_RS03240 - 648981..649385 (+) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -
  MKD48_RS03245 - 649837..649929 (+) 93 WP_031789435.1 hypothetical protein -
  MKD48_RS03250 - 650061..650294 (+) 234 WP_000384523.1 DUF1146 family protein -
  MKD48_RS03255 murA 650405..651670 (+) 1266 WP_000358006.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  MKD48_RS03260 fabZ 651704..652144 (+) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  MKD48_RS03265 - 652202..652642 (-) 441 WP_000846750.1 YwpF-like family protein -
  MKD48_RS03270 ssb 652836..653231 (+) 396 WP_000932694.1 single-stranded DNA-binding protein Machinery gene
  MKD48_RS03275 sceD 653620..654315 (+) 696 WP_000752002.1 lytic transglycosylase SceD -
  MKD48_RS03280 tenA 654702..655391 (+) 690 WP_000396069.1 thiaminase II -
  MKD48_RS03285 thiD 655384..656214 (+) 831 WP_000594959.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  MKD48_RS03290 thiM 656198..656989 (+) 792 WP_001108482.1 hydroxyethylthiazole kinase -
  MKD48_RS03295 thiE 656991..657632 (+) 642 WP_000483153.1 thiamine phosphate synthase -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=657883 MKD48_RS03270 WP_000932694.1 652836..653231(+) (ssb) [Staphylococcus aureus strain P5]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=657883 MKD48_RS03270 WP_000932694.1 652836..653231(+) (ssb) [Staphylococcus aureus strain P5]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATATACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

100

100

1
  ssb Staphylococcus aureus MW2

99.237

100

0.992