Detailed information
Bioinformatically predicted
Overview
| Name | comFC | Type | Machinery gene |
| Locus tag | NY40_RS02220 | Genome accession | NZ_AP014523 |
| Coordinates | 437826..438401 (-) | Length | 191 a.a. |
| NCBI ID | WP_041050092.1 | Uniprot ID | - |
| Organism | Helicobacter pylori NY40 | ||
| Function | ssDNA transport into the cell (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 432826..443401
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NY40_RS09020 (NY40_0445) | - | 434533..435162 (-) | 630 | WP_041050086.1 | restriction endonuclease subunit S | - |
| NY40_RS09025 (NY40_0446) | - | 435134..435757 (-) | 624 | WP_041050088.1 | restriction endonuclease subunit S | - |
| NY40_RS02215 (NY40_0447) | - | 435754..437793 (-) | 2040 | WP_041050090.1 | class I SAM-dependent DNA methyltransferase | - |
| NY40_RS02220 (NY40_0448) | comFC | 437826..438401 (-) | 576 | WP_041050092.1 | ComF family protein | Machinery gene |
| NY40_RS02225 (NY40_0449) | tmk | 438389..438964 (-) | 576 | WP_041050094.1 | dTMP kinase | - |
| NY40_RS02230 (NY40_0450) | coaD | 438966..439439 (-) | 474 | WP_041050096.1 | pantetheine-phosphate adenylyltransferase | - |
| NY40_RS02235 (NY40_0451) | - | 439439..440002 (-) | 564 | WP_041050098.1 | UbiX family flavin prenyltransferase | - |
| NY40_RS02240 (NY40_0452) | flgA | 440012..440668 (-) | 657 | WP_041050100.1 | flagellar basal body P-ring formation chaperone FlgA | - |
| NY40_RS02245 (NY40_0453) | uvrD | 440665..442710 (-) | 2046 | WP_041050103.1 | DNA helicase UvrD | - |
Sequence
Protein
Download Length: 191 a.a. Molecular weight: 21303.90 Da Isoelectric Point: 9.2848
>NTDB_id=65779 NY40_RS02220 WP_041050092.1 437826..438401(-) (comFC) [Helicobacter pylori NY40]
MRCLTCLKLSFKPLCPNCLNDLPLSLRVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGAEFVKILQEKG
LTTPLYGIAIDDKIKSFYSHSAALLKGFCQGNLKPTYGRLRANNAVSYAGKSLEFRANNPRDFTFKGDKNLDYFLLDDII
TTGTTLKEALKYLKALNIKAHFAIALCSADE
MRCLTCLKLSFKPLCPNCLNDLPLSLRVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGAEFVKILQEKG
LTTPLYGIAIDDKIKSFYSHSAALLKGFCQGNLKPTYGRLRANNAVSYAGKSLEFRANNPRDFTFKGDKNLDYFLLDDII
TTGTTLKEALKYLKALNIKAHFAIALCSADE
Nucleotide
Download Length: 576 bp
>NTDB_id=65779 NY40_RS02220 WP_041050092.1 437826..438401(-) (comFC) [Helicobacter pylori NY40]
ATGCGCTGTTTAACCTGTTTGAAGCTTTCTTTTAAGCCTCTTTGCCCCAATTGCCTAAACGATCTGCCCTTAAGCTTAAG
AGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAACTCATTAAAAGCAAATACG
CGCTGATTGGCTCTCGCATTTTGCCCTTGCTTTCTCAAAAAGCTGGCGCGGAGTTTGTGAAAATCCTGCAAGAAAAAGGC
TTGACTACCCCCCTTTATGGCATCGCCATTGATGATAAAATCAAATCCTTTTACTCGCATTCAGCCGCGCTTTTAAAAGG
CTTTTGTCAAGGCAATTTAAAGCCCACTTACGGGCGTTTAAGGGCTAATAACGCTGTTTCGTATGCCGGGAAAAGCTTAG
AATTTCGCGCTAACAACCCACGGGATTTCACCTTCAAAGGCGATAAAAATTTAGATTATTTTTTATTAGATGACATTATC
ACCACCGGCACCACCCTAAAAGAAGCCCTAAAATACCTTAAAGCTTTAAACATTAAAGCGCACTTTGCGATCGCGCTTTG
CAGCGCGGATGAATGA
ATGCGCTGTTTAACCTGTTTGAAGCTTTCTTTTAAGCCTCTTTGCCCCAATTGCCTAAACGATCTGCCCTTAAGCTTAAG
AGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAACTCATTAAAAGCAAATACG
CGCTGATTGGCTCTCGCATTTTGCCCTTGCTTTCTCAAAAAGCTGGCGCGGAGTTTGTGAAAATCCTGCAAGAAAAAGGC
TTGACTACCCCCCTTTATGGCATCGCCATTGATGATAAAATCAAATCCTTTTACTCGCATTCAGCCGCGCTTTTAAAAGG
CTTTTGTCAAGGCAATTTAAAGCCCACTTACGGGCGTTTAAGGGCTAATAACGCTGTTTCGTATGCCGGGAAAAGCTTAG
AATTTCGCGCTAACAACCCACGGGATTTCACCTTCAAAGGCGATAAAAATTTAGATTATTTTTTATTAGATGACATTATC
ACCACCGGCACCACCCTAAAAGAAGCCCTAAAATACCTTAAAGCTTTAAACATTAAAGCGCACTTTGCGATCGCGCTTTG
CAGCGCGGATGAATGA
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comFC | Helicobacter pylori 26695 |
95.288 |
100 |
0.953 |
| ctsW | Campylobacter jejuni subsp. jejuni 81-176 |
35.938 |
100 |
0.361 |