Detailed information    

insolico Bioinformatically predicted

Overview

Name   kpsS   Type   Regulator
Locus tag   H7R53_RS03955 Genome accession   NZ_AP022087
Coordinates   837555..838781 (-) Length   408 a.a.
NCBI ID   WP_001596181.1    Uniprot ID   -
Organism   Escherichia coli strain WP4-S18-ESBL-07     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 832555..843781
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H7R53_RS03940 (WP4S18E07_07710) - 834860..835951 (-) 1092 WP_001596182.1 Stealth CR1 domain-containing protein -
  H7R53_RS03945 (WP4S18E07_07720) - 835955..836626 (-) 672 WP_000590810.1 ABC transporter ATP-binding protein -
  H7R53_RS03950 (WP4S18E07_07730) - 836623..837399 (-) 777 WP_001513438.1 ABC transporter permease -
  H7R53_RS03955 (WP4S18E07_07740) kpsS 837555..838781 (-) 1227 WP_001596181.1 capsular biosynthesis protein Regulator
  H7R53_RS03960 (WP4S18E07_07750) - 838816..840843 (-) 2028 WP_001596180.1 capsular polysaccharide biosynthesis protein -
  H7R53_RS03965 (WP4S18E07_07760) kdsB 840840..841580 (-) 741 WP_001596179.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  H7R53_RS03970 (WP4S18E07_07770) - 841590..843266 (-) 1677 WP_001305965.1 polysaccharide biosynthesis/export family protein -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 48550.96 Da        Isoelectric Point: 10.1306

>NTDB_id=65779 H7R53_RS03955 WP_001596181.1 837555..838781(-) (kpsS) [Escherichia coli strain WP4-S18-ESBL-07]
MQGNALTILLSGKKYLLLQGPMGPFFNDVAEWLESLGRNAVNVVFNGGDRFYCRNRQYQAYNQTPKEFPGWLRDLHRQYD
FDTILCFGDCRPLHKEAKRWAKSKGIRFLAFEEGYLRPQFITVEEGGVNAYSSLPRDPDFYRKLPDMPAPHVENLKPSTM
KRIGHAMWYYLMGWHYRHEFPRYRHHKSFSPWNEARCWVRAYWRKQLYRVTQRNVLPRLMNELDQRYYLAVLQVYNDSQI
RNHSNYNDVRDYINEVMYSFSRKAPKESYLVIKHHPMDRGHRLYRPLIKRLSKKYGLGERVIYVHDLPMPELLRHAKAVV
TINSTAGISALIHNKPLKVMGNSLYDIVDLTYQGTLDDFWLTKFKPDIKLFKKFKEYLLFKTQINHVFYGNEKINKSINI
NSFIGSHK

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=65779 H7R53_RS03955 WP_001596181.1 837555..838781(-) (kpsS) [Escherichia coli strain WP4-S18-ESBL-07]
ATGCAAGGTAATGCACTAACCATTTTATTATCGGGTAAAAAATATCTGCTATTGCAGGGACCGATGGGACCTTTTTTCAA
TGACGTTGCCGAATGGTTAGAGTCATTAGGCCGTAACGCTGTGAATGTTGTGTTCAACGGCGGTGATCGTTTTTACTGCC
GCAATCGACAATACCAGGCTTACAACCAAACGCCGAAAGAATTTCCCGGTTGGTTGCGAGATCTCCACCGGCAATATGAC
TTTGATACCATCCTCTGCTTTGGTGACTGCCGCCCATTACACAAAGAAGCAAAACGGTGGGCTAAGTCGAAAGGGATCCG
CTTTCTGGCATTTGAGGAAGGATATTTACGCCCGCAATTTATAACCGTTGAAGAAGGCGGAGTGAACGCATATTCATCAC
TACCGCGCGATCCTGATTTTTATCGTAAGTTGCCAGATATGCCTGCGCCGCACGTTGAGAACTTAAAACCTTCAACGATG
AAACGCATTGGCCATGCGATGTGGTATTACCTGATGGGCTGGCATTACCGTCATGAGTTCCCTCGCTACCGCCACCACAA
ATCGTTTTCCCCCTGGAATGAGGCACGTTGCTGGGTTCGTGCATACTGGCGCAAGCAACTTTACAGGGTAACACAGCGTA
ATGTATTGCCGAGGTTAATGAATGAGCTGGACCAGCGTTATTATCTTGCCGTTTTGCAGGTGTATAACGATAGCCAGATT
CGTAACCACAGCAATTATAACGATGTGCGAGACTATATTAATGAAGTCATGTACTCATTTTCGCGTAAAGCGCCGAAAGA
GAGTTATTTAGTGATCAAACATCATCCGATGGATCGTGGTCACAGACTCTATCGACCATTAATTAAGCGGTTAAGTAAGA
AATATGGCTTAGGTGAGCGCGTCATTTATGTGCACGATCTCCCGATGCCGGAATTATTACGCCATGCAAAAGCGGTGGTG
ACAATTAACAGTACGGCGGGGATCTCTGCGCTGATTCATAACAAGCCACTGAAAGTTATGGGAAATTCTCTTTATGATAT
CGTTGACTTAACATACCAAGGAACATTAGATGACTTCTGGTTAACAAAATTCAAACCAGACATAAAGTTGTTTAAAAAAT
TTAAAGAGTATTTATTGTTTAAAACACAAATAAATCATGTTTTTTATGGAAACGAGAAAATAAATAAGAGCATAAATATC
AATAGTTTTATTGGTTCACACAAATAA

Domains

Predicted by InterProScan.

Capsule polysaccharide biosynthesis protein (Capsule_synth)

(83-389)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kpsS Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

39.744

95.588

0.38

Multiple sequence alignment