Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   MJX77_RS07535 Genome accession   NZ_CP092454
Coordinates   1582337..1582966 (-) Length   209 a.a.
NCBI ID   WP_252061096.1    Uniprot ID   -
Organism   Acinetobacter sp. AHP123     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1577337..1587966
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MJX77_RS07500 mlaE 1577664..1578443 (+) 780 WP_005301186.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -
  MJX77_RS07505 - 1578443..1579126 (+) 684 WP_005301188.1 outer membrane lipid asymmetry maintenance protein MlaD -
  MJX77_RS07510 - 1579153..1579794 (+) 642 WP_191900427.1 ABC transporter substrate-binding protein -
  MJX77_RS07515 - 1579805..1580092 (+) 288 WP_004789663.1 STAS domain-containing protein -
  MJX77_RS07520 - 1580165..1581178 (-) 1014 WP_004789661.1 CorA family divalent cation transporter -
  MJX77_RS07525 - 1581337..1581918 (+) 582 WP_004789659.1 TIGR00730 family Rossman fold protein -
  MJX77_RS07530 - 1581933..1582331 (+) 399 WP_252061094.1 NUDIX domain-containing protein -
  MJX77_RS07535 comF 1582337..1582966 (-) 630 WP_252061096.1 phosphoribosyltransferase family protein Machinery gene
  MJX77_RS07540 recG 1582959..1585004 (-) 2046 WP_252061097.1 ATP-dependent DNA helicase RecG -
  MJX77_RS07545 - 1585025..1585840 (+) 816 WP_252061098.1 NAD(P)H-binding protein -
  MJX77_RS07550 - 1585920..1586903 (+) 984 WP_252061099.1 putative solute-binding protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24227.37 Da        Isoelectric Point: 9.2445

>NTDB_id=657728 MJX77_RS07535 WP_252061096.1 1582337..1582966(-) (comF) [Acinetobacter sp. AHP123]
MFSFLNPQHLIQLLTPCLLCESDVREKHSLCKECWKQFPWLKQTIQRNDQSVLVACDYAYPVSRIIQQFKYEQKLHYEIL
LGEILQQLKFPKVQAIVPMPISNQRLIERGFNQSLLLANILSKQLKIPVWQPVQRLAEHSQKGLSRLERFENIEQQFIAL
SQEKRRYRRVLIIDDVITTGSSIQALSQALKQLGCTSIYAACLAATLTS

Nucleotide


Download         Length: 630 bp        

>NTDB_id=657728 MJX77_RS07535 WP_252061096.1 1582337..1582966(-) (comF) [Acinetobacter sp. AHP123]
ATGTTTAGTTTCTTAAATCCACAGCATCTTATTCAATTGCTCACACCTTGCTTGTTATGTGAGTCAGATGTACGAGAAAA
ACATTCGCTCTGTAAGGAATGTTGGAAGCAGTTTCCTTGGCTTAAGCAAACAATTCAACGCAATGATCAATCAGTTCTTG
TGGCCTGTGATTATGCTTATCCAGTTAGCCGAATCATTCAGCAGTTTAAATATGAACAGAAATTACATTATGAAATTTTG
TTAGGTGAAATTTTACAACAACTCAAATTTCCCAAGGTACAAGCTATCGTACCTATGCCTATTTCAAATCAACGTTTAAT
CGAACGTGGCTTTAATCAGTCATTGTTACTTGCAAACATCTTAAGCAAACAATTAAAAATACCTGTTTGGCAGCCAGTAC
AACGTCTTGCTGAACATTCGCAGAAAGGGCTTTCTCGACTTGAACGCTTTGAGAACATTGAGCAACAATTTATTGCGCTT
TCTCAAGAAAAACGGCGTTATCGCCGTGTTCTTATTATTGATGATGTAATAACCACTGGAAGCTCTATTCAAGCACTCAG
CCAAGCACTTAAACAATTAGGCTGCACATCTATCTATGCCGCTTGTTTAGCGGCAACTTTGACCAGTTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(114-205)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

85.646

100

0.856
  comF Acinetobacter baumannii D1279779

84.689

100

0.847