Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   MJX77_RS07195 Genome accession   NZ_CP092454
Coordinates   1512695..1513117 (+) Length   140 a.a.
NCBI ID   WP_252061047.1    Uniprot ID   -
Organism   Acinetobacter sp. AHP123     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1507695..1518117
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MJX77_RS07185 - 1508073..1512122 (+) 4050 WP_252061044.1 PilC/PilY family type IV pilus protein -
  MJX77_RS07190 - 1512168..1512695 (+) 528 WP_252061314.1 pili assembly chaperone -
  MJX77_RS07195 comF 1512695..1513117 (+) 423 WP_252061047.1 type IV pilin protein Machinery gene
  MJX77_RS07200 rpsP 1513264..1513515 (+) 252 WP_000260334.1 30S ribosomal protein S16 -
  MJX77_RS07205 rimM 1513536..1514084 (+) 549 WP_004789777.1 ribosome maturation factor RimM -
  MJX77_RS07210 trmD 1514127..1514882 (+) 756 WP_192836274.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  MJX77_RS07215 rplS 1515102..1515470 (+) 369 WP_004789772.1 50S ribosomal protein L19 -
  MJX77_RS07220 - 1515523..1516464 (-) 942 WP_252061315.1 triacylglycerol lipase -
  MJX77_RS07225 - 1516582..1517613 (-) 1032 WP_252061049.1 lipase secretion chaperone -

Sequence

Protein


Download         Length: 140 a.a.        Molecular weight: 15470.54 Da        Isoelectric Point: 8.8956

>NTDB_id=657727 MJX77_RS07195 WP_252061047.1 1512695..1513117(+) (comF) [Acinetobacter sp. AHP123]
MKKYEGFTLIELMIVVAIIAILVAIAYPSYTQYKIRGNRADVQSEMMQTAQRLQSYYVINHNYTSATLDNGLASKDYPAS
NPIYTIALVTNSQTWTLTATPKTNTIQAGNGTVLLNSEGQKCWTKGQSCTTSATSNWDGR

Nucleotide


Download         Length: 423 bp        

>NTDB_id=657727 MJX77_RS07195 WP_252061047.1 1512695..1513117(+) (comF) [Acinetobacter sp. AHP123]
ATGAAAAAATATGAAGGTTTTACCCTCATAGAGCTAATGATTGTGGTTGCTATTATTGCAATTTTAGTAGCAATTGCTTA
TCCCTCATATACACAGTATAAAATTCGTGGAAATCGTGCGGATGTGCAGAGTGAAATGATGCAAACAGCACAGCGTCTAC
AAAGTTATTATGTGATTAATCATAATTATACTAGTGCAACGCTAGATAATGGTTTAGCTAGTAAAGATTATCCAGCATCC
AATCCAATTTATACTATTGCATTAGTTACAAATTCTCAAACATGGACGCTTACAGCAACTCCTAAAACAAATACGATTCA
AGCTGGAAATGGGACTGTACTTTTGAACAGTGAAGGGCAGAAATGTTGGACTAAAGGTCAGTCTTGTACAACCTCTGCAA
CTTCAAATTGGGATGGACGTTAA

Domains

Predicted by InterproScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(28-107)

Prokaryotic N-terminal methylation motif (N_methyl)

(1-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baylyi ADP1

53.472

100

0.55
  pilE Acinetobacter baumannii D1279779

54.412

97.143

0.529
  pilA2 Legionella pneumophila str. Paris

39.231

92.857

0.364
  pilA2 Legionella pneumophila strain ERS1305867

39.231

92.857

0.364