Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   LXM97_RS07185 Genome accession   NZ_CP092447
Coordinates   1532221..1532667 (-) Length   148 a.a.
NCBI ID   WP_001796473.1    Uniprot ID   -
Organism   Staphylococcus aureus strain SYN     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1527221..1537667
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LXM97_RS07155 (LXM97_07155) gcvPA 1528147..1529493 (-) 1347 WP_000019687.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  LXM97_RS07160 (LXM97_07160) gcvT 1529513..1530604 (-) 1092 WP_000093349.1 glycine cleavage system aminomethyltransferase GcvT -
  LXM97_RS07165 (LXM97_07165) - 1530763..1531287 (-) 525 WP_001015116.1 shikimate kinase -
  LXM97_RS07170 (LXM97_07170) - 1531277..1531423 (-) 147 WP_001789879.1 hypothetical protein -
  LXM97_RS07175 (LXM97_07175) comGF 1531520..1532017 (-) 498 WP_001838632.1 competence type IV pilus minor pilin ComGF Machinery gene
  LXM97_RS07180 (LXM97_07180) comGE 1531935..1532234 (-) 300 WP_000844413.1 hypothetical protein Machinery gene
  LXM97_RS07185 (LXM97_07185) comGD 1532221..1532667 (-) 447 WP_001796473.1 competence type IV pilus minor pilin ComGD Machinery gene
  LXM97_RS07190 (LXM97_07190) comGC 1532645..1532956 (-) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  LXM97_RS07195 (LXM97_07195) comGB 1532970..1534040 (-) 1071 WP_000776407.1 competence type IV pilus assembly protein ComGB Machinery gene
  LXM97_RS07200 (LXM97_07200) comGA 1534012..1534986 (-) 975 WP_000697218.1 competence type IV pilus ATPase ComGA Machinery gene
  LXM97_RS07205 (LXM97_07205) - 1535038..1535661 (-) 624 WP_001223008.1 MBL fold metallo-hydrolase -
  LXM97_RS07210 (LXM97_07210) - 1535658..1535987 (-) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  LXM97_RS07215 (LXM97_07215) - 1535987..1536973 (-) 987 WP_000161315.1 ROK family glucokinase -
  LXM97_RS07220 (LXM97_07220) - 1536970..1537173 (-) 204 WP_000087561.1 YqgQ family protein -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 17131.31 Da        Isoelectric Point: 10.3312

>NTDB_id=657634 LXM97_RS07185 WP_001796473.1 1532221..1532667(-) (comGD) [Staphylococcus aureus strain SYN]
MEKQLQIRKQSAFTMIEMLVVMMLISIFLLLTMTSKGLSNLRVIDDEANIISLITELNYIKSQAIANQGYINVRFYENSD
TIKVIENNKIRFLKLKVGKIINVAKVDIIAFDKKGNINKFGSITIDNNNSIYRIIFHIEKGRIRYEKL

Nucleotide


Download         Length: 447 bp        

>NTDB_id=657634 LXM97_RS07185 WP_001796473.1 1532221..1532667(-) (comGD) [Staphylococcus aureus strain SYN]
ATGGAGAAGCAGTTGCAAATTAGAAAGCAGTCAGCATTTACTATGATTGAGATGCTTGTGGTAATGATGTTAATCAGTAT
ATTTTTACTTTTGACAATGACATCTAAAGGATTAAGCAATCTTAGAGTAATAGATGATGAGGCAAATATCATTTCTCTTA
TTACTGAATTGAATTATATTAAGTCGCAAGCTATAGCAAATCAAGGATATATCAATGTTAGATTTTATGAAAACAGTGAC
ACTATTAAAGTAATAGAGAATAATAAAATACGATTTCTAAAATTAAAAGTAGGCAAAATAATTAATGTTGCAAAAGTTGA
TATTATTGCCTTTGATAAAAAAGGGAATATCAATAAATTTGGTAGCATAACAATTGATAATAACAATTCAATTTATAGAA
TAATATTCCATATTGAAAAAGGAAGAATTCGTTATGAAAAGCTATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(8-31)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Staphylococcus aureus MW2

99.324

100

0.993
  comGD Staphylococcus aureus N315

99.324

100

0.993