Detailed information
Bioinformatically predicted
Overview
| Name | clpC | Type | Regulator |
| Locus tag | OG887_RS19015 | Genome accession | NZ_CP108261 |
| Coordinates | 4279686..4282286 (-) | Length | 866 a.a. |
| NCBI ID | WP_124719620.1 | Uniprot ID | - |
| Organism | Streptomyces sp. NBC_00053 | ||
| Function | degradation of ComK; degradation of DegU (predicted from homology) Competence regulation |
||
Genomic Context
Location: 4274686..4287286
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| OG887_RS18995 (OG887_19010) | - | 4274856..4275377 (-) | 522 | WP_124719615.1 | DUF2617 family protein | - |
| OG887_RS19000 (OG887_19015) | - | 4276103..4277272 (+) | 1170 | WP_124719617.1 | pyridoxal phosphate-dependent aminotransferase | - |
| OG887_RS19005 (OG887_19020) | - | 4277345..4277905 (-) | 561 | WP_124719618.1 | YbjN domain-containing protein | - |
| OG887_RS19010 (OG887_19025) | - | 4278015..4279280 (-) | 1266 | WP_266790618.1 | MFS transporter | - |
| OG887_RS19015 (OG887_19030) | clpC | 4279686..4282286 (-) | 2601 | WP_124719620.1 | ATP-dependent chaperone ClpB | Regulator |
| OG887_RS19020 (OG887_19035) | - | 4282529..4282933 (+) | 405 | WP_124719621.1 | TIGR03618 family F420-dependent PPOX class oxidoreductase | - |
| OG887_RS19025 (OG887_19040) | - | 4283050..4283370 (-) | 321 | WP_072487853.1 | (2Fe-2S)-binding protein | - |
| OG887_RS19030 (OG887_19045) | - | 4283367..4283717 (-) | 351 | WP_124719622.1 | hypothetical protein | - |
| OG887_RS19035 (OG887_19050) | - | 4283819..4284832 (+) | 1014 | WP_206433523.1 | helix-turn-helix transcriptional regulator | - |
| OG887_RS19040 (OG887_19055) | - | 4284971..4285417 (-) | 447 | WP_072487850.1 | helix-turn-helix domain-containing protein | - |
| OG887_RS19045 (OG887_19060) | dnaJ | 4285419..4286603 (-) | 1185 | WP_266620334.1 | molecular chaperone DnaJ | - |
Sequence
Protein
Download Length: 866 a.a. Molecular weight: 94576.92 Da Isoelectric Point: 4.7121
>NTDB_id=657635 OG887_RS19015 WP_124719620.1 4279686..4282286(-) (clpC) [Streptomyces sp. NBC_00053]
MDAELTNKSRDAINAATSRAVKDGHPDLAPGHLLLALLAGEDNENITDLLAAVEADQIAVRTETERLLGAQPSVTGSTVA
PPQPNRELLAVINDAAQRAKELGDDYISTEHLLIGIAAEGGRAGEILSGQGASAKRLLDAFEKSRGGRRVTTPDPEGQYK
ALEKFGTDFTAAAREGKLDPVIGRDQEIRRVVQVLSRRTKNNPVLIGEPGVGKTAVVEGLAQRIVKGDVPESLKNKRLVS
LDLGAMVAGAKYRGEFEERLKTVLSEIKESDGQIITFIDELHTVVGAGAGGDSAMDAGNMLKPMLARGELRMVGATTLDE
YRERIEKDPALERRFQQVLVAEPSVEDTIAILRGLKGRYEAHHKVSIADSALVAAATLSDRYITSRFLPDKAIDLVDEAA
SRLRMEIDSSPVEIDELQRAVDRLHMEELALKNETDPGSRQRLEKLRRDLADKEEELRGLNARWEKEKQGLNRVGELKER
LDELHGQAERAQRDGDFDTASKLLYGEIPGLERELAEASEAEQEAAKDTMVKEEVGPDDIADVVGSWTGIPAGRLLEGET
QKLLRMEDELGRRLIGQGEAVRAVSDAVRRTRAGIADPDRPTGSFLFLGPTGVGKTELAKALADFLFDDERAMVRIDMSE
YGEKHSVARLVGAPPGYVGYEEGGQLTEAVRRRPYSVVLLDEVEKAHPEVFDILLQVLDDGRLTDGQGRTVDFRNTILIL
TSNLGSQFLVDPLTKPEEKKERVLELVRASFKPEFLNRLDDLVVFSALSGDELAHIAKLQIDRLAKRLADRQLTLDVTPA
ALAWLAEEGNDPAYGARPLRRLIQTAIGDRLAKEILSGEVKDGDTVRVDRVGDDLLVGPATADGAL
MDAELTNKSRDAINAATSRAVKDGHPDLAPGHLLLALLAGEDNENITDLLAAVEADQIAVRTETERLLGAQPSVTGSTVA
PPQPNRELLAVINDAAQRAKELGDDYISTEHLLIGIAAEGGRAGEILSGQGASAKRLLDAFEKSRGGRRVTTPDPEGQYK
ALEKFGTDFTAAAREGKLDPVIGRDQEIRRVVQVLSRRTKNNPVLIGEPGVGKTAVVEGLAQRIVKGDVPESLKNKRLVS
LDLGAMVAGAKYRGEFEERLKTVLSEIKESDGQIITFIDELHTVVGAGAGGDSAMDAGNMLKPMLARGELRMVGATTLDE
YRERIEKDPALERRFQQVLVAEPSVEDTIAILRGLKGRYEAHHKVSIADSALVAAATLSDRYITSRFLPDKAIDLVDEAA
SRLRMEIDSSPVEIDELQRAVDRLHMEELALKNETDPGSRQRLEKLRRDLADKEEELRGLNARWEKEKQGLNRVGELKER
LDELHGQAERAQRDGDFDTASKLLYGEIPGLERELAEASEAEQEAAKDTMVKEEVGPDDIADVVGSWTGIPAGRLLEGET
QKLLRMEDELGRRLIGQGEAVRAVSDAVRRTRAGIADPDRPTGSFLFLGPTGVGKTELAKALADFLFDDERAMVRIDMSE
YGEKHSVARLVGAPPGYVGYEEGGQLTEAVRRRPYSVVLLDEVEKAHPEVFDILLQVLDDGRLTDGQGRTVDFRNTILIL
TSNLGSQFLVDPLTKPEEKKERVLELVRASFKPEFLNRLDDLVVFSALSGDELAHIAKLQIDRLAKRLADRQLTLDVTPA
ALAWLAEEGNDPAYGARPLRRLIQTAIGDRLAKEILSGEVKDGDTVRVDRVGDDLLVGPATADGAL
Nucleotide
Download Length: 2601 bp
>NTDB_id=657635 OG887_RS19015 WP_124719620.1 4279686..4282286(-) (clpC) [Streptomyces sp. NBC_00053]
GTGGACGCCGAGCTGACCAACAAGAGCCGGGACGCCATCAACGCAGCCACCAGCAGGGCCGTGAAGGACGGGCACCCCGA
TCTGGCCCCCGGGCACCTGCTGCTCGCGCTGCTCGCGGGCGAGGACAACGAGAACATCACCGATCTGCTCGCCGCCGTCG
AGGCCGACCAGATCGCCGTACGCACCGAGACCGAGCGGCTGCTGGGCGCCCAGCCCAGCGTCACCGGGTCCACCGTCGCC
CCGCCGCAGCCCAACCGTGAGCTGCTCGCCGTCATCAACGACGCCGCGCAGCGCGCGAAGGAGCTCGGCGACGACTACAT
CTCCACCGAGCACCTGCTGATCGGCATCGCGGCCGAGGGCGGCCGCGCCGGTGAGATCCTCAGTGGGCAGGGGGCCAGTG
CGAAGAGGCTGCTGGACGCATTCGAGAAGAGCAGGGGAGGGCGCCGGGTGACCACACCCGACCCGGAGGGCCAGTACAAG
GCGCTGGAGAAGTTCGGTACGGACTTCACCGCCGCCGCACGCGAGGGCAAGCTCGACCCGGTCATCGGCCGTGACCAGGA
GATCCGCCGGGTCGTCCAGGTGCTCTCCCGCCGCACCAAGAACAACCCCGTGCTCATCGGCGAGCCCGGCGTCGGCAAGA
CGGCCGTCGTCGAGGGCCTCGCCCAGCGCATCGTCAAGGGCGACGTCCCCGAGTCCCTGAAGAACAAGCGGCTCGTCTCG
CTCGACCTCGGTGCGATGGTCGCGGGCGCCAAGTACCGCGGCGAGTTCGAGGAGCGGCTGAAGACCGTCCTCTCCGAGAT
CAAGGAGAGCGACGGGCAGATCATCACCTTCATCGACGAGCTGCACACCGTCGTGGGCGCGGGCGCCGGCGGCGACTCCG
CCATGGACGCCGGCAACATGCTCAAGCCGATGCTGGCCCGCGGCGAGCTCCGCATGGTGGGCGCGACGACGCTCGACGAG
TACCGCGAGCGGATCGAGAAGGACCCCGCCCTGGAGCGCCGCTTCCAGCAGGTGCTGGTGGCCGAGCCGAGCGTCGAGGA
CACCATCGCGATCCTGCGCGGGCTCAAGGGCCGCTACGAGGCCCACCACAAGGTCTCCATCGCGGACTCGGCGCTGGTGG
CCGCCGCGACCCTCTCCGACCGCTACATCACCTCCCGCTTCCTCCCCGACAAGGCGATCGACCTGGTCGACGAGGCGGCG
TCCCGGCTGCGCATGGAGATCGACTCCTCGCCGGTCGAGATCGACGAGCTCCAGCGTGCCGTGGACCGCCTCCACATGGA
GGAGCTGGCCCTGAAGAACGAGACCGACCCCGGCTCCCGGCAGCGCCTGGAGAAGCTCCGCCGCGACCTCGCGGACAAGG
AGGAGGAGCTGCGCGGCCTCAACGCCCGCTGGGAGAAGGAGAAGCAGGGCCTCAACCGCGTCGGTGAGCTGAAGGAGCGC
CTCGACGAACTGCACGGCCAGGCCGAACGCGCCCAGCGCGACGGTGACTTCGACACCGCCTCCAAGCTGCTGTACGGGGA
GATCCCCGGCCTGGAGCGGGAGCTGGCGGAGGCGTCCGAGGCCGAGCAGGAGGCCGCCAAGGACACGATGGTCAAGGAGG
AGGTCGGCCCGGACGACATCGCCGATGTCGTCGGCTCCTGGACCGGCATCCCGGCCGGGCGTCTGCTGGAGGGCGAGACG
CAGAAGCTGCTGCGCATGGAGGACGAGCTCGGCAGGCGCCTGATCGGGCAGGGCGAGGCCGTGCGGGCGGTGTCGGACGC
GGTACGCCGCACCCGCGCCGGAATCGCCGACCCCGACCGGCCCACCGGCTCGTTCCTCTTCCTCGGCCCGACCGGTGTCG
GCAAGACGGAGCTCGCCAAGGCGCTCGCCGACTTCCTCTTCGACGACGAGCGGGCCATGGTCCGCATCGACATGAGCGAG
TACGGCGAGAAGCACAGCGTGGCGCGGCTCGTCGGCGCCCCGCCCGGATACGTCGGCTACGAGGAGGGCGGCCAGCTCAC
CGAGGCGGTCCGCCGCCGCCCGTACAGCGTCGTGCTGCTGGACGAGGTCGAGAAGGCCCACCCCGAGGTCTTCGACATCC
TGCTCCAGGTGCTCGACGACGGCCGGCTCACCGACGGGCAGGGCCGGACGGTGGACTTCCGCAACACCATCCTGATCCTG
ACCTCCAACCTCGGCAGCCAGTTCCTGGTCGATCCCCTGACCAAGCCCGAGGAGAAGAAGGAACGGGTCCTGGAGCTCGT
ACGGGCCTCGTTCAAGCCGGAGTTCCTCAACCGGCTGGACGACCTGGTGGTCTTCTCCGCCCTGTCCGGTGACGAGCTCG
CGCACATCGCGAAGCTCCAGATCGACCGGCTCGCCAAGCGGCTGGCCGACCGGCAGCTCACGCTCGACGTCACCCCGGCC
GCCCTGGCCTGGCTGGCCGAGGAGGGCAACGACCCGGCGTACGGGGCGCGGCCGCTGCGCCGCCTCATCCAGACGGCGAT
CGGCGACCGGCTGGCGAAGGAGATCCTCTCCGGCGAGGTGAAGGACGGGGACACCGTCCGGGTGGACCGGGTCGGTGACG
ACCTGCTCGTCGGCCCCGCGACCGCGGACGGCGCCTTGTAG
GTGGACGCCGAGCTGACCAACAAGAGCCGGGACGCCATCAACGCAGCCACCAGCAGGGCCGTGAAGGACGGGCACCCCGA
TCTGGCCCCCGGGCACCTGCTGCTCGCGCTGCTCGCGGGCGAGGACAACGAGAACATCACCGATCTGCTCGCCGCCGTCG
AGGCCGACCAGATCGCCGTACGCACCGAGACCGAGCGGCTGCTGGGCGCCCAGCCCAGCGTCACCGGGTCCACCGTCGCC
CCGCCGCAGCCCAACCGTGAGCTGCTCGCCGTCATCAACGACGCCGCGCAGCGCGCGAAGGAGCTCGGCGACGACTACAT
CTCCACCGAGCACCTGCTGATCGGCATCGCGGCCGAGGGCGGCCGCGCCGGTGAGATCCTCAGTGGGCAGGGGGCCAGTG
CGAAGAGGCTGCTGGACGCATTCGAGAAGAGCAGGGGAGGGCGCCGGGTGACCACACCCGACCCGGAGGGCCAGTACAAG
GCGCTGGAGAAGTTCGGTACGGACTTCACCGCCGCCGCACGCGAGGGCAAGCTCGACCCGGTCATCGGCCGTGACCAGGA
GATCCGCCGGGTCGTCCAGGTGCTCTCCCGCCGCACCAAGAACAACCCCGTGCTCATCGGCGAGCCCGGCGTCGGCAAGA
CGGCCGTCGTCGAGGGCCTCGCCCAGCGCATCGTCAAGGGCGACGTCCCCGAGTCCCTGAAGAACAAGCGGCTCGTCTCG
CTCGACCTCGGTGCGATGGTCGCGGGCGCCAAGTACCGCGGCGAGTTCGAGGAGCGGCTGAAGACCGTCCTCTCCGAGAT
CAAGGAGAGCGACGGGCAGATCATCACCTTCATCGACGAGCTGCACACCGTCGTGGGCGCGGGCGCCGGCGGCGACTCCG
CCATGGACGCCGGCAACATGCTCAAGCCGATGCTGGCCCGCGGCGAGCTCCGCATGGTGGGCGCGACGACGCTCGACGAG
TACCGCGAGCGGATCGAGAAGGACCCCGCCCTGGAGCGCCGCTTCCAGCAGGTGCTGGTGGCCGAGCCGAGCGTCGAGGA
CACCATCGCGATCCTGCGCGGGCTCAAGGGCCGCTACGAGGCCCACCACAAGGTCTCCATCGCGGACTCGGCGCTGGTGG
CCGCCGCGACCCTCTCCGACCGCTACATCACCTCCCGCTTCCTCCCCGACAAGGCGATCGACCTGGTCGACGAGGCGGCG
TCCCGGCTGCGCATGGAGATCGACTCCTCGCCGGTCGAGATCGACGAGCTCCAGCGTGCCGTGGACCGCCTCCACATGGA
GGAGCTGGCCCTGAAGAACGAGACCGACCCCGGCTCCCGGCAGCGCCTGGAGAAGCTCCGCCGCGACCTCGCGGACAAGG
AGGAGGAGCTGCGCGGCCTCAACGCCCGCTGGGAGAAGGAGAAGCAGGGCCTCAACCGCGTCGGTGAGCTGAAGGAGCGC
CTCGACGAACTGCACGGCCAGGCCGAACGCGCCCAGCGCGACGGTGACTTCGACACCGCCTCCAAGCTGCTGTACGGGGA
GATCCCCGGCCTGGAGCGGGAGCTGGCGGAGGCGTCCGAGGCCGAGCAGGAGGCCGCCAAGGACACGATGGTCAAGGAGG
AGGTCGGCCCGGACGACATCGCCGATGTCGTCGGCTCCTGGACCGGCATCCCGGCCGGGCGTCTGCTGGAGGGCGAGACG
CAGAAGCTGCTGCGCATGGAGGACGAGCTCGGCAGGCGCCTGATCGGGCAGGGCGAGGCCGTGCGGGCGGTGTCGGACGC
GGTACGCCGCACCCGCGCCGGAATCGCCGACCCCGACCGGCCCACCGGCTCGTTCCTCTTCCTCGGCCCGACCGGTGTCG
GCAAGACGGAGCTCGCCAAGGCGCTCGCCGACTTCCTCTTCGACGACGAGCGGGCCATGGTCCGCATCGACATGAGCGAG
TACGGCGAGAAGCACAGCGTGGCGCGGCTCGTCGGCGCCCCGCCCGGATACGTCGGCTACGAGGAGGGCGGCCAGCTCAC
CGAGGCGGTCCGCCGCCGCCCGTACAGCGTCGTGCTGCTGGACGAGGTCGAGAAGGCCCACCCCGAGGTCTTCGACATCC
TGCTCCAGGTGCTCGACGACGGCCGGCTCACCGACGGGCAGGGCCGGACGGTGGACTTCCGCAACACCATCCTGATCCTG
ACCTCCAACCTCGGCAGCCAGTTCCTGGTCGATCCCCTGACCAAGCCCGAGGAGAAGAAGGAACGGGTCCTGGAGCTCGT
ACGGGCCTCGTTCAAGCCGGAGTTCCTCAACCGGCTGGACGACCTGGTGGTCTTCTCCGCCCTGTCCGGTGACGAGCTCG
CGCACATCGCGAAGCTCCAGATCGACCGGCTCGCCAAGCGGCTGGCCGACCGGCAGCTCACGCTCGACGTCACCCCGGCC
GCCCTGGCCTGGCTGGCCGAGGAGGGCAACGACCCGGCGTACGGGGCGCGGCCGCTGCGCCGCCTCATCCAGACGGCGAT
CGGCGACCGGCTGGCGAAGGAGATCCTCTCCGGCGAGGTGAAGGACGGGGACACCGTCCGGGTGGACCGGGTCGGTGACG
ACCTGCTCGTCGGCCCCGCGACCGCGGACGGCGCCTTGTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| clpC | Bacillus subtilis subsp. subtilis str. 168 |
44.091 |
100 |
0.448 |
| clpC | Lactococcus lactis subsp. lactis strain DGCC12653 |
42.739 |
97.806 |
0.418 |
| clpC | Lactococcus lactis subsp. cremoris KW2 |
48.107 |
82.333 |
0.396 |
| clpE | Streptococcus mutans UA159 |
47.626 |
77.829 |
0.371 |
| clpE | Streptococcus pneumoniae Rx1 |
45.586 |
79.792 |
0.364 |
| clpE | Streptococcus pneumoniae D39 |
45.586 |
79.792 |
0.364 |
| clpE | Streptococcus pneumoniae R6 |
45.586 |
79.792 |
0.364 |
| clpE | Streptococcus pneumoniae TIGR4 |
45.64 |
79.446 |
0.363 |