Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   OHU31_RS21245 Genome accession   NZ_CP108259
Coordinates   4698371..4698970 (+) Length   199 a.a.
NCBI ID   WP_030929396.1    Uniprot ID   A0ABV2UGK5
Organism   Streptomyces sp. NBC_00055     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4693371..4703970
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHU31_RS21220 (OHU31_21260) - 4693708..4695090 (+) 1383 WP_327422586.1 aspartate aminotransferase family protein -
  OHU31_RS21225 (OHU31_21265) - 4695203..4695934 (+) 732 WP_327422585.1 GntR family transcriptional regulator -
  OHU31_RS21230 (OHU31_21270) - 4696068..4696718 (+) 651 WP_030929387.1 hypothetical protein -
  OHU31_RS21235 (OHU31_21275) - 4696787..4697602 (-) 816 WP_093773517.1 SLATT domain-containing protein -
  OHU31_RS21240 (OHU31_21280) - 4697962..4698297 (+) 336 WP_078852974.1 YbaB/EbfC family nucleoid-associated protein -
  OHU31_RS21245 (OHU31_21285) recR 4698371..4698970 (+) 600 WP_030929396.1 recombination mediator RecR Machinery gene
  OHU31_RS21250 (OHU31_21290) - 4699063..4699722 (+) 660 WP_030929399.1 DUF5063 domain-containing protein -
  OHU31_RS21255 (OHU31_21295) - 4699942..4701213 (+) 1272 WP_030929402.1 aspartate kinase -
  OHU31_RS21260 (OHU31_21300) - 4701210..4702274 (+) 1065 WP_093773513.1 aspartate-semialdehyde dehydrogenase -
  OHU31_RS21265 (OHU31_21305) - 4702654..4703229 (+) 576 WP_030929408.1 SigE family RNA polymerase sigma factor -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 21874.16 Da        Isoelectric Point: 5.1721

>NTDB_id=657560 OHU31_RS21245 WP_030929396.1 4698371..4698970(+) (recR) [Streptomyces sp. NBC_00055]
MYEGVVQDLIDELGRLPGVGPKSAQRIAFHILQAEPTDVRRLAHALLEVKDKVRFCSVCGNVAQEEQCGICRDARRDRTV
ICVVEEPKDVVAIERTREFRGRYHVLGGAISPIEGVGPDDLRIRELLARLADGSVTELILATDPNLEGEATATYLARMIK
PMGLRVTRLASGLPVGGDLEYADEVTLGRAFEGRRLLDV

Nucleotide


Download         Length: 600 bp        

>NTDB_id=657560 OHU31_RS21245 WP_030929396.1 4698371..4698970(+) (recR) [Streptomyces sp. NBC_00055]
TTGTACGAAGGCGTGGTCCAGGACCTCATCGACGAACTGGGCAGGCTGCCCGGCGTCGGTCCCAAGAGCGCGCAGCGGAT
CGCTTTCCACATCCTGCAGGCCGAGCCCACCGATGTACGCCGTCTCGCCCATGCCCTCCTGGAGGTCAAGGACAAGGTCC
GGTTCTGCTCGGTGTGCGGCAATGTCGCGCAGGAGGAGCAGTGCGGGATCTGCCGCGACGCGCGTCGCGACCGGACGGTG
ATCTGTGTGGTCGAGGAGCCGAAGGATGTCGTGGCGATCGAGCGGACCCGTGAGTTCCGCGGCCGTTACCACGTCCTCGG
CGGGGCGATCAGCCCGATCGAGGGCGTCGGTCCGGACGATCTGCGCATCCGTGAGCTGCTGGCGAGGCTCGCCGACGGGT
CCGTCACGGAACTGATCCTGGCCACCGACCCCAACCTGGAGGGCGAGGCCACCGCGACGTACCTGGCGCGGATGATCAAG
CCGATGGGCCTGCGGGTGACGCGGCTCGCCAGCGGGCTGCCGGTGGGCGGCGACCTCGAGTACGCGGACGAGGTCACCCT
GGGCCGCGCGTTCGAGGGGAGGCGGCTGCTCGATGTGTAG

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH)

(2-27)

RecR protein (RecR_ZnF)

(38-77)

Toprim domain (Toprim_4)

(80-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

55.612

98.492

0.548
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

54.124

97.487

0.528
  recR Streptococcus pneumoniae R6

47.423

97.487

0.462