Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   MI302_RS00530 Genome accession   NZ_CP092445
Coordinates   8556..8864 (-) Length   102 a.a.
NCBI ID   WP_239725910.1    Uniprot ID   -
Organism   Thermus sp. NEB1569     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3556..13864
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MI302_RS00510 (MI302_00510) rsmG 4274..5002 (+) 729 WP_172955633.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -
  MI302_RS00515 (MI302_00515) soj 4996..5748 (+) 753 WP_015718360.1 chromosome-partitioning ATPase Soj -
  MI302_RS00520 (MI302_00520) - 5732..6544 (+) 813 WP_015718359.1 ParB/RepB/Spo0J family partition protein -
  MI302_RS00525 (MI302_00525) comA/comEC 6532..8559 (-) 2028 WP_239725909.1 ComEC/Rec2 family competence protein Machinery gene
  MI302_RS00530 (MI302_00530) comEA 8556..8864 (-) 309 WP_239725910.1 helix-hairpin-helix domain-containing protein Machinery gene
  MI302_RS00535 (MI302_00535) - 8837..9478 (-) 642 WP_239725911.1 YcxB family protein -
  MI302_RS00540 (MI302_00540) - 9502..10152 (+) 651 WP_239725912.1 glycerophosphodiester phosphodiesterase -
  MI302_RS00545 (MI302_00545) - 10163..10693 (+) 531 WP_019550774.1 inorganic diphosphatase -
  MI302_RS00550 (MI302_00550) - 10775..11272 (+) 498 WP_239725913.1 TFIIB-type zinc ribbon-containing protein -
  MI302_RS00555 (MI302_00555) rsmI 11274..12086 (+) 813 WP_019550776.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  MI302_RS00560 (MI302_00560) pfkA 12083..13051 (+) 969 WP_239725914.1 6-phosphofructokinase -
  MI302_RS00565 (MI302_00565) - 13100..13555 (-) 456 WP_015718349.1 hypothetical protein -

Sequence

Protein


Download         Length: 102 a.a.        Molecular weight: 11163.30 Da        Isoelectric Point: 8.5053

>NTDB_id=657513 MI302_RS00530 WP_239725910.1 8556..8864(-) (comEA) [Thermus sp. NEB1569]
MVLGYLLAVALLALFSLWPKLVPKPQPVWVETLAEASFEPPAPEPISLNQASLEELMSLPGVGPVLAQRIVAGRPYARVE
DLLRVKGIGPATLERLRPYLRP

Nucleotide


Download         Length: 309 bp        

>NTDB_id=657513 MI302_RS00530 WP_239725910.1 8556..8864(-) (comEA) [Thermus sp. NEB1569]
GTGGTCCTTGGCTACCTCCTCGCGGTAGCCCTCCTGGCCCTCTTCAGCCTCTGGCCCAAGCTGGTCCCGAAACCCCAGCC
GGTGTGGGTGGAAACCCTGGCGGAGGCCAGCTTTGAGCCCCCAGCCCCTGAGCCCATTAGCTTGAACCAAGCCAGCCTCG
AGGAGCTCATGAGCCTCCCTGGGGTCGGCCCCGTGCTGGCCCAGAGGATCGTGGCGGGAAGACCCTACGCCCGGGTGGAG
GACCTCCTCAGGGTGAAGGGCATTGGCCCGGCAACCCTAGAGCGGCTCCGCCCTTACCTACGGCCATGA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(45-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Thermus thermophilus HB27

76.471

100

0.765
  comEA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

40.741

100

0.431