Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA/comEC   Type   Machinery gene
Locus tag   MI302_RS00525 Genome accession   NZ_CP092445
Coordinates   6532..8559 (-) Length   675 a.a.
NCBI ID   WP_239725909.1    Uniprot ID   -
Organism   Thermus sp. NEB1569     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1532..13559
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MI302_RS00505 (MI302_00505) mnmG 2444..4237 (+) 1794 WP_239725908.1 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG -
  MI302_RS00510 (MI302_00510) rsmG 4274..5002 (+) 729 WP_172955633.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -
  MI302_RS00515 (MI302_00515) soj 4996..5748 (+) 753 WP_015718360.1 chromosome-partitioning ATPase Soj -
  MI302_RS00520 (MI302_00520) - 5732..6544 (+) 813 WP_015718359.1 ParB/RepB/Spo0J family partition protein -
  MI302_RS00525 (MI302_00525) comA/comEC 6532..8559 (-) 2028 WP_239725909.1 ComEC/Rec2 family competence protein Machinery gene
  MI302_RS00530 (MI302_00530) comEA 8556..8864 (-) 309 WP_239725910.1 helix-hairpin-helix domain-containing protein Machinery gene
  MI302_RS00535 (MI302_00535) - 8837..9478 (-) 642 WP_239725911.1 YcxB family protein -
  MI302_RS00540 (MI302_00540) - 9502..10152 (+) 651 WP_239725912.1 glycerophosphodiester phosphodiesterase -
  MI302_RS00545 (MI302_00545) - 10163..10693 (+) 531 WP_019550774.1 inorganic diphosphatase -
  MI302_RS00550 (MI302_00550) - 10775..11272 (+) 498 WP_239725913.1 TFIIB-type zinc ribbon-containing protein -
  MI302_RS00555 (MI302_00555) rsmI 11274..12086 (+) 813 WP_019550776.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  MI302_RS00560 (MI302_00560) pfkA 12083..13051 (+) 969 WP_239725914.1 6-phosphofructokinase -
  MI302_RS00565 (MI302_00565) - 13100..13555 (-) 456 WP_015718349.1 hypothetical protein -

Sequence

Protein


Download         Length: 675 a.a.        Molecular weight: 71771.06 Da        Isoelectric Point: 9.7607

>NTDB_id=657512 MI302_RS00525 WP_239725909.1 6532..8559(-) (comA/comEC) [Thermus sp. NEB1569]
MRRPFSGVGLGLGGLLGALVLLHPLLLALAPLLFLWQGVPALLGFALVLGRGLLLPLPEPPYGVRVEGVFTVREGFTQWE
GHRLRLKHFPPLADGVYRLKGYLAPPQPRRNPGGLDERAWLLAQGVRGVFHVEQAEALAPLPDPRAPWRERLTAGLSPQV
GEVVEGLVLGDKRGLEDAYPLFQKAGLAHLLAVSGQNVGYLAATLALLPLGRWRYLLALLLLPAYLWLAGPSPSLLRASL
MAGLSLLGLFLGLGAAGVFQALGLALFLQLLLRPEALLGLGFQLSYLAVLGLALVLPALALPSGARGWLLGGLAASLAAQ
LPLIPLLLHHFAFLPLLAPLVNLLALPLAALLVPLGLLKLLLGGVLAPLVETLARALLALAQAASQGPLLRWGEVSPPGF
ALYYLALLPPFLVLRGLFPWRKALLLATLPVLAGLAAGWPKPLDLWALDVGHGDALLARMGGAEVLVDGGRPEQGEKVVR
ALRALGVEALEVLVATHPDADHHGGLLKVAEEVPIGLALLSPAFPKEHPLVQALQSRKVPILFPGTGTRLRVGKGSLEVL
WPPGPQADDNQGGLVLLLDFVGPKALLLADVPGEVEERLTPPQVAVVKVSHHGSRTGTDEDLLERTRPQVALIGVGRNPH
GHPHPEVLERLDQHGVRVYRTDQNGAVRVLFGYAW

Nucleotide


Download         Length: 2028 bp        

>NTDB_id=657512 MI302_RS00525 WP_239725909.1 6532..8559(-) (comA/comEC) [Thermus sp. NEB1569]
ATGAGGCGCCCCTTCTCTGGGGTGGGTCTGGGCCTCGGAGGGCTTCTGGGGGCCTTGGTCCTCCTCCACCCCCTCCTCCT
GGCCCTGGCACCCCTCCTCTTCCTCTGGCAGGGGGTTCCCGCCCTCCTGGGCTTCGCTCTGGTCCTGGGGCGGGGCCTCC
TCCTTCCCCTTCCCGAACCGCCTTACGGGGTGCGGGTGGAGGGCGTCTTCACCGTCCGGGAGGGGTTCACCCAGTGGGAG
GGACACCGCCTCCGCCTCAAGCATTTCCCGCCCCTGGCGGACGGGGTCTACCGCCTCAAGGGGTACCTGGCCCCCCCGCA
GCCCCGGCGCAATCCTGGGGGACTGGACGAGAGGGCCTGGCTCCTGGCCCAGGGGGTGCGCGGGGTGTTTCACGTGGAAC
AGGCGGAGGCCCTGGCCCCCCTACCCGATCCTCGGGCACCCTGGCGAGAGCGCCTCACCGCGGGCCTCTCCCCCCAGGTC
GGGGAAGTGGTGGAGGGCCTGGTCCTAGGGGACAAAAGGGGCCTCGAGGACGCCTACCCCCTCTTCCAGAAAGCGGGCCT
CGCCCACCTCCTTGCGGTCTCCGGGCAGAACGTGGGCTATTTGGCGGCGACCCTAGCCCTTCTTCCCCTGGGGCGGTGGC
GCTACCTCCTCGCCCTCCTCCTTCTCCCCGCCTACCTGTGGCTGGCAGGCCCCAGCCCCTCCCTGCTGCGGGCGAGCCTC
ATGGCGGGCCTTTCCCTCCTGGGGCTCTTCCTCGGCCTGGGAGCCGCGGGGGTCTTCCAGGCCTTGGGGTTGGCCCTTTT
CCTCCAACTCCTCCTCCGCCCCGAGGCCCTCCTGGGCCTAGGCTTCCAGCTCTCCTACCTGGCGGTGCTGGGCCTGGCCC
TGGTCCTCCCCGCCTTGGCCCTTCCCTCAGGGGCCCGGGGCTGGCTCCTCGGGGGCCTCGCCGCCAGCCTGGCCGCCCAG
CTCCCCCTTATCCCCCTCCTCCTCCACCACTTCGCCTTCCTCCCCCTCCTCGCCCCCCTGGTCAACCTCCTTGCCCTCCC
CCTGGCGGCCCTCCTCGTGCCCCTGGGTCTTCTGAAGCTCCTCCTTGGGGGAGTCCTGGCGCCCCTGGTGGAAACCCTGG
CCCGAGCCCTCCTGGCCCTGGCTCAGGCCGCCTCCCAAGGACCCCTGCTCCGGTGGGGGGAGGTCTCGCCCCCGGGCTTT
GCCCTTTACTACCTGGCCCTCCTGCCTCCCTTCCTCGTCCTCCGCGGGCTCTTCCCCTGGCGCAAGGCCCTCCTCCTCGC
CACCCTGCCCGTCCTGGCTGGCCTCGCCGCCGGCTGGCCCAAACCCTTGGACCTCTGGGCCCTGGACGTGGGCCATGGGG
ACGCCCTCCTGGCCCGCATGGGCGGGGCCGAGGTGCTGGTGGACGGGGGCCGGCCCGAGCAGGGGGAAAAGGTGGTGCGG
GCCCTAAGGGCCCTGGGGGTGGAAGCCCTCGAGGTCCTGGTGGCCACCCACCCCGATGCCGACCACCACGGAGGCCTCCT
CAAGGTGGCCGAGGAGGTTCCCATCGGCCTCGCCCTCCTCTCCCCCGCCTTCCCAAAGGAGCACCCCCTGGTCCAGGCCC
TGCAAAGCCGGAAAGTGCCCATCCTCTTCCCCGGAACCGGCACCCGCCTTCGCGTGGGCAAAGGGAGCCTCGAGGTCCTC
TGGCCTCCTGGCCCGCAAGCAGACGACAACCAAGGCGGTCTGGTCCTCCTCCTGGACTTCGTCGGGCCCAAAGCCCTTCT
CCTGGCAGACGTGCCCGGGGAGGTGGAGGAAAGGCTCACTCCCCCGCAGGTGGCGGTGGTTAAGGTTAGCCACCACGGCT
CCCGCACGGGCACGGACGAGGACCTCCTGGAACGCACCCGACCCCAGGTGGCCTTGATAGGCGTGGGAAGGAACCCCCAT
GGCCACCCCCACCCCGAGGTCTTGGAGCGCCTGGACCAGCATGGGGTAAGGGTCTACCGCACCGACCAAAACGGCGCGGT
GCGGGTCCTCTTTGGCTACGCCTGGTAA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(451-633)

Competence protein (Competence)

(167-413)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA/comEC Thermus thermophilus HB27

70.939

99.407

0.705