Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   MG974_RS16515 Genome accession   NZ_CP092439
Coordinates   3372936..3374321 (-) Length   461 a.a.
NCBI ID   WP_103695177.1    Uniprot ID   -
Organism   Bacillus velezensis strain 504     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3367936..3379321
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MG974_RS16480 (MG974_16480) flgL 3368111..3369028 (-) 918 WP_060657505.1 flagellar hook-associated protein FlgL -
  MG974_RS16485 (MG974_16485) flgK 3369040..3370557 (-) 1518 WP_003151395.1 flagellar hook-associated protein FlgK -
  MG974_RS16490 (MG974_16490) - 3370573..3371055 (-) 483 WP_003151394.1 flagellar protein FlgN -
  MG974_RS16495 (MG974_16495) flgM 3371070..3371336 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  MG974_RS16500 (MG974_16500) - 3371406..3371825 (-) 420 WP_003151392.1 TIGR03826 family flagellar region protein -
  MG974_RS16505 (MG974_16505) comFC 3371899..3372588 (-) 690 WP_196616643.1 phosphoribosyltransferase family protein Machinery gene
  MG974_RS16510 (MG974_16510) - 3372594..3372878 (-) 285 WP_003151389.1 late competence development ComFB family protein -
  MG974_RS16515 (MG974_16515) comFA 3372936..3374321 (-) 1386 WP_103695177.1 DEAD/DEAH box helicase Machinery gene
  MG974_RS16520 (MG974_16520) - 3374429..3375277 (-) 849 WP_230639654.1 DegV family protein -
  MG974_RS16525 (MG974_16525) degU 3375375..3376064 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  MG974_RS16530 (MG974_16530) degS 3376141..3377304 (-) 1164 WP_003151385.1 two-component sensor histidine kinase DegS Regulator
  MG974_RS16535 (MG974_16535) - 3377527..3378174 (+) 648 WP_003151384.1 YigZ family protein -

Sequence

Protein


Download         Length: 461 a.a.        Molecular weight: 52545.97 Da        Isoelectric Point: 10.1458

>NTDB_id=657466 MG974_RS16515 WP_103695177.1 3372936..3374321(-) (comFA) [Bacillus velezensis strain 504]
MAEGASEFSEVRDFFYGRHLLRSEIPFSDHRIKRFIEKEYITAEPSIIRRKNRYVCQRCGQSDQACFAAFWAPSAKRQIT
YCRACVMMGRTDELTSLYSWNQAPENSWEPVKLSWEGTLTDGQKQAAAALTDAIKERQELLVWAVCGSGKTEMLFPGIEF
ALNQGLRVCVATPRTDVVLELLPRLKKAFEKVDVSALYGGSEDKGRLTPLMISTAHQLMRYRDIFDVMIIDEVDAFPFSA
DETLRFAVDKARKKNSALVYVTATPSDTLKKNAEAGLLKSVRIPARYHRKPLPEPRFLWCGNWKKKLQKGKLPRSVTDWV
RQKLQSQLPVFLFVPSVHVLKKTTDYFQKLNIRAEGVHAEDTFRKDKVKRFRDGRLDLLVTTTILERGVTVPKVQTCVLG
AEAPIFTESALVQIAGRTGRHYKHFSGDVVLFHFGITVGMKKAKKHIEHMNKLAQKSKLLD

Nucleotide


Download         Length: 1386 bp        

>NTDB_id=657466 MG974_RS16515 WP_103695177.1 3372936..3374321(-) (comFA) [Bacillus velezensis strain 504]
ATGGCCGAAGGTGCTTCAGAATTTTCAGAGGTGCGGGATTTCTTTTACGGCCGGCATTTATTGAGATCTGAGATACCGTT
TTCAGATCATCGCATCAAGCGTTTTATAGAAAAAGAATATATAACGGCCGAGCCGTCAATCATCCGCCGGAAAAACCGTT
ACGTCTGCCAACGATGCGGTCAGTCTGATCAAGCCTGCTTTGCGGCATTTTGGGCGCCCTCTGCCAAAAGGCAGATTACC
TATTGCCGTGCCTGTGTCATGATGGGAAGGACTGATGAACTGACATCATTATATTCTTGGAATCAAGCCCCTGAAAACAG
CTGGGAGCCTGTAAAGCTTTCTTGGGAAGGAACACTGACAGACGGACAGAAGCAGGCCGCCGCCGCGCTTACAGATGCGA
TAAAAGAGAGACAAGAGCTGTTAGTATGGGCGGTTTGCGGATCGGGGAAAACAGAGATGCTGTTTCCTGGTATCGAGTTT
GCCCTGAATCAAGGTTTGCGCGTCTGTGTCGCGACTCCGCGTACAGATGTCGTACTTGAACTGCTGCCGAGACTGAAAAA
AGCATTTGAGAAAGTCGACGTTTCTGCTTTGTACGGCGGCAGCGAGGACAAAGGCCGCTTGACTCCGCTGATGATTTCAA
CCGCTCACCAGCTGATGCGCTACCGAGATATTTTTGATGTCATGATAATAGATGAAGTAGATGCGTTTCCTTTTTCAGCC
GATGAGACATTAAGGTTCGCTGTTGATAAAGCGAGGAAGAAAAACAGCGCCCTTGTTTATGTAACGGCAACTCCTTCTGA
CACATTAAAAAAGAATGCTGAAGCAGGTTTGCTGAAAAGCGTTCGCATACCGGCCAGATATCATCGGAAACCCCTCCCGG
AGCCGCGTTTTTTGTGGTGCGGCAATTGGAAGAAGAAGCTTCAGAAAGGAAAACTGCCGCGCTCTGTAACGGATTGGGTC
CGCCAAAAACTTCAATCACAGCTGCCGGTTTTCTTATTCGTTCCGTCTGTACACGTATTGAAAAAGACAACGGATTATTT
TCAGAAATTAAACATACGGGCAGAAGGCGTACATGCGGAAGACACATTCAGAAAGGATAAAGTGAAACGATTCAGAGACG
GCCGGCTTGATCTGCTGGTAACGACTACGATTTTAGAAAGAGGGGTTACCGTGCCCAAAGTTCAGACATGTGTCCTCGGC
GCAGAAGCACCTATCTTTACTGAGAGCGCGCTCGTACAGATCGCGGGCAGAACGGGAAGGCATTATAAACATTTCAGCGG
TGATGTCGTCCTGTTTCATTTCGGAATTACAGTCGGAATGAAAAAAGCAAAAAAACATATAGAACATATGAACAAATTGG
CACAAAAAAGTAAATTGTTGGACTAG

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(118-266)

Helicase conserved C-terminal domain (Helicase_C)

(328-421)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

63.043

99.783

0.629