Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   MG974_RS16505 Genome accession   NZ_CP092439
Coordinates   3371899..3372588 (-) Length   229 a.a.
NCBI ID   WP_196616643.1    Uniprot ID   -
Organism   Bacillus velezensis strain 504     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3366899..3377588
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MG974_RS16470 (MG974_16470) fliW 3366990..3367421 (-) 432 WP_060657507.1 flagellar assembly protein FliW -
  MG974_RS16475 (MG974_16475) - 3367451..3368020 (-) 570 WP_003151397.1 DUF6470 family protein -
  MG974_RS16480 (MG974_16480) flgL 3368111..3369028 (-) 918 WP_060657505.1 flagellar hook-associated protein FlgL -
  MG974_RS16485 (MG974_16485) flgK 3369040..3370557 (-) 1518 WP_003151395.1 flagellar hook-associated protein FlgK -
  MG974_RS16490 (MG974_16490) - 3370573..3371055 (-) 483 WP_003151394.1 flagellar protein FlgN -
  MG974_RS16495 (MG974_16495) flgM 3371070..3371336 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  MG974_RS16500 (MG974_16500) - 3371406..3371825 (-) 420 WP_003151392.1 TIGR03826 family flagellar region protein -
  MG974_RS16505 (MG974_16505) comFC 3371899..3372588 (-) 690 WP_196616643.1 phosphoribosyltransferase family protein Machinery gene
  MG974_RS16510 (MG974_16510) - 3372594..3372878 (-) 285 WP_003151389.1 late competence development ComFB family protein -
  MG974_RS16515 (MG974_16515) comFA 3372936..3374321 (-) 1386 WP_103695177.1 DEAD/DEAH box helicase Machinery gene
  MG974_RS16520 (MG974_16520) - 3374429..3375277 (-) 849 WP_230639654.1 DegV family protein -
  MG974_RS16525 (MG974_16525) degU 3375375..3376064 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  MG974_RS16530 (MG974_16530) degS 3376141..3377304 (-) 1164 WP_003151385.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25259.95 Da        Isoelectric Point: 8.4880

>NTDB_id=657465 MG974_RS16505 WP_196616643.1 3371899..3372588(-) (comFC) [Bacillus velezensis strain 504]
MNCLLCDSPISSSLTWRSLFSLAPEQEVCTICSSRFEKIEGPVCSICGRPQESNEKCADCAARESKTEKRFLLRQNRSVY
LYNDAMKDSLARFKFRGDAKIIQAFGRDFAAGFKAAYPSNTHTLIPIPLSGERLAERGFNQSELLASLLGMPVIFPLIRL
NNEKQSKKSKTERLSAEKKFSAAENSAEGMNVILIDDIYTTGATLHQAAEVLLTAGKASSVSSFTLIRS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=657465 MG974_RS16505 WP_196616643.1 3371899..3372588(-) (comFC) [Bacillus velezensis strain 504]
CTGAATTGTTTATTGTGTGACTCACCAATTTCAAGTTCATTGACTTGGAGATCTCTGTTTTCTCTGGCGCCCGAGCAAGA
GGTATGCACCATATGCAGCAGCCGATTCGAAAAAATTGAGGGCCCCGTATGCAGTATATGCGGGAGGCCTCAGGAGTCAA
ATGAAAAATGCGCTGATTGTGCGGCCCGGGAATCAAAAACGGAAAAGCGCTTTTTGCTGCGGCAAAACCGTTCGGTATAT
TTGTATAATGATGCGATGAAGGACTCATTAGCCCGGTTTAAATTCAGGGGTGATGCGAAAATCATTCAAGCATTTGGACG
TGACTTTGCTGCCGGCTTTAAAGCGGCATATCCATCAAATACACATACTCTCATCCCTATTCCGCTGAGCGGCGAACGGC
TGGCGGAACGCGGTTTCAATCAATCCGAGCTGCTGGCCTCTCTGCTCGGAATGCCCGTCATTTTCCCCCTCATCCGACTG
AACAATGAAAAACAATCCAAAAAGAGCAAAACAGAAAGGCTGTCCGCAGAAAAAAAGTTTTCAGCAGCCGAAAACTCGGC
CGAAGGTATGAACGTCATCTTAATAGACGATATTTATACGACGGGCGCCACACTGCATCAAGCCGCCGAAGTCCTGCTGA
CAGCGGGTAAAGCGTCATCGGTCTCCTCTTTTACTTTAATCAGGAGCTAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(2-61)

Phosphoribosyl transferase domain (Pribosyltran)

(144-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

60.793

99.127

0.603