Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   MG974_RS01755 Genome accession   NZ_CP092439
Coordinates   321601..322038 (-) Length   145 a.a.
NCBI ID   WP_003156588.1    Uniprot ID   -
Organism   Bacillus velezensis strain 504     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 316601..327038
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MG974_RS01715 (MG974_01715) - 317181..317345 (-) 165 WP_370648487.1 molybdopterin dinucleotide binding domain-containing protein -
  MG974_RS01720 (MG974_01720) - 317459..318661 (+) 1203 WP_032857854.1 GTP-binding protein -
  MG974_RS01725 (MG974_01725) - 318726..319862 (+) 1137 WP_003156594.1 zinc-dependent alcohol dehydrogenase -
  MG974_RS01730 (MG974_01730) - 319877..320311 (+) 435 WP_003156592.1 RDD family protein -
  MG974_RS01735 (MG974_01735) - 320428..320703 (+) 276 WP_369719109.1 YckD family protein -
  MG974_RS01740 (MG974_01740) - 320807..320923 (+) 117 WP_015388718.1 family 1 glycosylhydrolase -
  MG974_RS01745 (MG974_01745) - 320922..321140 (+) 219 Protein_303 family 1 glycosylhydrolase -
  MG974_RS01750 (MG974_01750) nin/comJ 321181..321579 (-) 399 WP_014304317.1 competence protein ComJ Regulator
  MG974_RS01755 (MG974_01755) nucA/comI 321601..322038 (-) 438 WP_003156588.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  MG974_RS01760 (MG974_01760) hxlB 322397..322954 (-) 558 WP_003156587.1 6-phospho-3-hexuloisomerase -
  MG974_RS01765 (MG974_01765) hxlA 322951..323586 (-) 636 WP_024084873.1 3-hexulose-6-phosphate synthase -
  MG974_RS01770 (MG974_01770) - 323818..324180 (+) 363 WP_014304320.1 winged helix-turn-helix transcriptional regulator -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16072.35 Da        Isoelectric Point: 8.4850

>NTDB_id=657407 MG974_RS01755 WP_003156588.1 321601..322038(-) (nucA/comI) [Bacillus velezensis strain 504]
MKTLKALLLVLIIIAGAVAALIKGDLFSDNEQTVQKSDYDKVILFPSDRYPETAKHIKDAIKEGHSSICTIDRDGVHKRR
EQSLKHVPVKTGYDRDEWPMAVCKQGGNNASVEYISPADNRGAGSWVGHQLTNDPDGTRVLFKIK

Nucleotide


Download         Length: 438 bp        

>NTDB_id=657407 MG974_RS01755 WP_003156588.1 321601..322038(-) (nucA/comI) [Bacillus velezensis strain 504]
TTGAAAACATTAAAAGCACTGCTGCTTGTTCTTATCATCATTGCCGGAGCAGTCGCGGCCCTGATCAAGGGTGATCTTTT
CTCAGATAACGAGCAGACCGTTCAGAAGAGTGATTACGACAAAGTAATCCTATTTCCGTCCGATCGATATCCGGAAACAG
CAAAGCATATTAAGGACGCGATAAAAGAAGGGCATTCCAGCATATGCACCATTGACAGAGACGGAGTACATAAGCGGCGT
GAGCAATCTCTTAAACATGTGCCTGTCAAAACGGGATACGATAGGGATGAATGGCCGATGGCGGTTTGTAAACAGGGCGG
AAACAATGCCTCCGTAGAATATATTTCTCCGGCAGACAACCGCGGAGCCGGCTCTTGGGTCGGACACCAGCTTACCAATG
ATCCCGACGGAACGAGAGTATTATTTAAAATCAAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(49-131)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

73.81

86.897

0.641