Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   OG953_RS24325 Genome accession   NZ_CP108256
Coordinates   5171235..5172647 (-) Length   470 a.a.
NCBI ID   WP_266360532.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00057     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5166235..5177647
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG953_RS24300 (OG953_24270) - 5166401..5167051 (-) 651 WP_093894040.1 SigE family RNA polymerase sigma factor -
  OG953_RS24305 (OG953_24275) - 5167227..5168129 (-) 903 WP_405686834.1 A/G-specific adenine glycosylase -
  OG953_RS24310 (OG953_24280) - 5168274..5168918 (-) 645 WP_405686835.1 phosphatase PAP2 family protein -
  OG953_RS24315 (OG953_24285) - 5169092..5169922 (+) 831 WP_405686836.1 hypothetical protein -
  OG953_RS24320 (OG953_24290) disA 5170030..5171154 (-) 1125 WP_114245192.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  OG953_RS24325 (OG953_24295) radA/sms 5171235..5172647 (-) 1413 WP_266360532.1 DNA repair protein RadA Machinery gene
  OG953_RS24330 (OG953_24300) - 5172885..5174753 (+) 1869 WP_405686839.1 BACON domain-containing protein -
  OG953_RS24335 (OG953_24305) - 5174852..5175694 (-) 843 WP_405686841.1 hypothetical protein -
  OG953_RS24340 (OG953_24310) - 5175735..5176676 (+) 942 WP_405686842.1 Ppx/GppA family phosphatase -
  OG953_RS24345 (OG953_24315) - 5176785..5177612 (+) 828 WP_405686843.1 sugar phosphate isomerase/epimerase family protein -

Sequence

Protein


Download         Length: 470 a.a.        Molecular weight: 49499.56 Da        Isoelectric Point: 8.2557

>NTDB_id=657408 OG953_RS24325 WP_266360532.1 5171235..5172647(-) (radA/sms) [Streptomyces sp. NBC_00057]
MAARTKSAKDRPSYRCTECGWTTAKWLGRCPECQAWGTVEEFGGAPAVRTTAAGRVSTAALPIGQVDSRQATARSTGVGE
LDRVLGGGLVPGAVVLLAGEPGVGKSTLLLDVAAKAASDDHRTLYVTAEESASQVRLRADRIRAINDHLYLAAETDLSAV
LGHLDAVKPSLLILDSVQTVASPEIDGAPGGMAQVREVAGALIRASKERGMSTLLVGHVTKDGAIAGPRLLEHLVDVVLS
FEGDRHARLRLVRGVKNRYGATDEVGCFELHDEGITGLADPSGLFLTRRDEPVPGTCLTVTLEGKRPLVAEVQALTVDSQ
IPSPRRTTSGLETSRVSMMLAVLEQRGRISSLGKRDIYSATVGGVKLSEPAADLAVALALASAASDTPLPKNLVAIGEVG
LAGEVRRVTGVQRRLAEAYRLGFTHALVPTDPGKVPAGMKVTEVANMGDALRVLPRRSHAQAPQEENARR

Nucleotide


Download         Length: 1413 bp        

>NTDB_id=657408 OG953_RS24325 WP_266360532.1 5171235..5172647(-) (radA/sms) [Streptomyces sp. NBC_00057]
ATGGCTGCCCGTACGAAATCCGCGAAGGACCGGCCGTCCTACCGCTGCACCGAATGCGGCTGGACGACCGCCAAATGGCT
CGGCCGCTGCCCCGAATGCCAGGCATGGGGGACGGTCGAGGAGTTCGGCGGCGCCCCCGCCGTGCGGACCACCGCGGCCG
GCCGGGTCAGCACCGCCGCACTCCCCATCGGCCAGGTCGACAGCCGGCAGGCCACCGCCCGGTCGACCGGTGTCGGCGAG
CTGGACCGGGTGCTCGGCGGCGGTCTCGTGCCGGGTGCCGTCGTGCTGCTCGCGGGCGAGCCGGGCGTCGGGAAGTCGAC
GCTGCTGCTGGACGTGGCCGCGAAGGCGGCGAGCGACGACCACCGCACGCTCTATGTCACCGCCGAGGAGTCCGCGAGCC
AGGTCCGCCTGCGCGCCGACCGGATCCGGGCGATCAACGACCATCTGTATCTCGCCGCGGAGACCGACCTGTCCGCGGTC
CTCGGCCATCTGGACGCCGTCAAACCGTCGCTTCTCATCCTCGACTCCGTACAGACGGTCGCCTCGCCCGAGATCGACGG
GGCGCCCGGCGGCATGGCACAGGTCCGGGAGGTCGCCGGTGCCCTCATCCGGGCCTCCAAGGAACGCGGTATGTCCACGC
TGCTGGTCGGCCATGTCACCAAGGACGGGGCGATCGCCGGGCCGCGGCTGCTGGAGCATCTCGTCGATGTGGTGCTGTCC
TTCGAGGGCGACCGCCATGCCCGCCTGCGGCTCGTACGGGGCGTCAAGAACAGGTACGGCGCGACCGACGAGGTCGGCTG
CTTCGAGCTGCACGACGAGGGAATCACCGGCCTCGCCGACCCGTCCGGGCTGTTCCTCACCCGCCGCGACGAACCCGTGC
CCGGCACCTGCCTGACCGTCACCCTGGAGGGCAAGCGGCCGCTCGTCGCCGAGGTGCAGGCGCTGACGGTCGATTCCCAG
ATCCCTTCGCCCCGGCGCACCACCTCGGGTCTGGAGACGTCCCGGGTGTCGATGATGCTGGCCGTTCTGGAGCAGCGCGG
CCGGATCAGCTCGCTCGGCAAGCGGGACATCTACAGCGCGACGGTCGGCGGTGTGAAGCTCTCCGAGCCCGCCGCGGACC
TCGCGGTCGCGCTGGCGCTGGCCAGTGCCGCGAGTGACACACCACTCCCCAAGAACCTGGTGGCGATCGGCGAAGTAGGT
CTCGCGGGCGAGGTCAGAAGGGTTACGGGAGTCCAGCGCAGGCTGGCCGAGGCGTACCGTCTTGGCTTCACGCACGCGCT
GGTTCCGACCGACCCGGGGAAGGTCCCGGCCGGTATGAAGGTCACGGAAGTCGCCAACATGGGTGATGCACTGAGAGTGC
TCCCGCGCCGGTCTCACGCACAGGCCCCACAGGAGGAGAACGCGCGCCGGTAG

Domains

Predicted by InterProScan.

AAA domain (AAA_25)

(84-223)

Subunit ChlI of Mg-chelatase (ChlI)

(370-430)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(14-41)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

43.709

96.383

0.421
  radA Streptococcus pneumoniae Rx1

42.826

96.383

0.413
  radA Streptococcus pneumoniae D39

42.826

96.383

0.413
  radA Streptococcus pneumoniae R6

42.826

96.383

0.413
  radA Streptococcus pneumoniae TIGR4

42.826

96.383

0.413
  radA Streptococcus mitis SK321

44.289

91.277

0.404
  radA Streptococcus mitis NCTC 12261

44.289

91.277

0.404