Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   OG953_RS23425 Genome accession   NZ_CP108256
Coordinates   4962051..4962650 (+) Length   199 a.a.
NCBI ID   WP_093899342.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00057     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4957051..4967650
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG953_RS23400 (OG953_23380) - 4957230..4958603 (+) 1374 WP_405686625.1 aspartate aminotransferase family protein -
  OG953_RS23405 (OG953_23385) - 4958710..4959483 (+) 774 WP_405686626.1 GntR family transcriptional regulator -
  OG953_RS23410 (OG953_23390) - 4959759..4960409 (+) 651 WP_405692008.1 hypothetical protein -
  OG953_RS23415 (OG953_23395) - 4960499..4961275 (-) 777 WP_405686628.1 SLATT domain-containing protein -
  OG953_RS23420 (OG953_23400) - 4961632..4961967 (+) 336 WP_405686629.1 YbaB/EbfC family nucleoid-associated protein -
  OG953_RS23425 (OG953_23405) recR 4962051..4962650 (+) 600 WP_093899342.1 recombination mediator RecR Machinery gene
  OG953_RS23430 (OG953_23410) - 4962764..4963423 (+) 660 WP_093899341.1 DUF5063 domain-containing protein -
  OG953_RS23435 (OG953_23415) - 4963663..4964202 (+) 540 WP_405686631.1 LamG-like jellyroll fold domain-containing protein -
  OG953_RS23440 (OG953_23420) - 4964420..4964557 (+) 138 WP_405692010.1 hypothetical protein -
  OG953_RS23445 (OG953_23425) - 4965095..4966366 (+) 1272 WP_405686632.1 aspartate kinase -
  OG953_RS23450 (OG953_23430) - 4966363..4967427 (+) 1065 WP_405686634.1 aspartate-semialdehyde dehydrogenase -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 21902.17 Da        Isoelectric Point: 5.1558

>NTDB_id=657401 OG953_RS23425 WP_093899342.1 4962051..4962650(+) (recR) [Streptomyces sp. NBC_00057]
MYEGVVQDLIDELGRLPGVGPKSAQRIAFHILQAEPTDVRRLAHALLEVKDKVRFCSVCGNVAQQEQCNICRDARRDQTV
ICVVEEPKDVVAIERTREFRGRYHVLGGAISPIEGVGPDDLRIRELLARLADGSITELILATDPNLEGEATATYLARMVK
PMGLRVTRLASGLPVGGDLEYADEVTLGRAFEGRRLLDV

Nucleotide


Download         Length: 600 bp        

>NTDB_id=657401 OG953_RS23425 WP_093899342.1 4962051..4962650(+) (recR) [Streptomyces sp. NBC_00057]
TTGTACGAAGGCGTGGTTCAGGACCTCATCGACGAGTTGGGCAGGCTGCCCGGCGTCGGTCCCAAGAGCGCGCAGCGGAT
CGCTTTCCACATCCTGCAGGCCGAGCCGACCGATGTGCGCCGCCTTGCCCATGCCCTCCTGGAGGTCAAGGACAAGGTCC
GGTTCTGTTCGGTCTGCGGCAATGTCGCCCAGCAGGAACAGTGCAACATCTGCCGCGACGCGCGCCGCGACCAGACGGTC
ATCTGTGTGGTCGAGGAGCCGAAGGATGTCGTCGCGATCGAGCGGACCCGTGAGTTCCGGGGCCGGTACCACGTGCTCGG
CGGCGCGATCAGCCCGATCGAGGGCGTCGGCCCCGACGATCTGCGCATCCGCGAACTGCTCGCCCGTCTTGCCGACGGCT
CGATCACGGAGCTGATCCTGGCGACCGACCCCAACCTGGAGGGCGAGGCCACCGCGACGTACCTGGCGCGGATGGTCAAG
CCGATGGGCCTGCGGGTCACCAGGCTGGCCAGCGGCCTGCCGGTGGGCGGCGACCTGGAGTACGCGGACGAGGTCACCCT
GGGCCGCGCCTTCGAGGGGAGGCGCCTGCTCGATGTCTGA

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(80-170)

Helix-hairpin-helix motif (HHH)

(2-27)

RecR protein (RecR_ZnF)

(38-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

55.612

98.492

0.548
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

54.639

97.487

0.533
  recR Streptococcus pneumoniae R6

47.423

97.487

0.462