Detailed information
Bioinformatically predicted
Overview
| Name | fimT | Type | Machinery gene |
| Locus tag | H7K53_RS15945 | Genome accession | NZ_AP022077 |
| Coordinates | 3300971..3301486 (+) | Length | 171 a.a. |
| NCBI ID | WP_000477151.1 | Uniprot ID | V5VA61 |
| Organism | Acinetobacter baumannii strain WP4-W18-ESBL-11 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 3295971..3306486
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| H7K53_RS15925 (WP4W18E11_31250) | - | 3296333..3297793 (+) | 1461 | WP_002133917.1 | amino acid permease | - |
| H7K53_RS15930 (WP4W18E11_31260) | - | 3298070..3299275 (+) | 1206 | WP_000512698.1 | RtcB family protein | - |
| H7K53_RS15935 (WP4W18E11_31270) | - | 3299294..3299437 (+) | 144 | WP_162138624.1 | hypothetical protein | - |
| H7K53_RS15940 (WP4W18E11_31280) | omp38 | 3299562..3300590 (-) | 1029 | WP_000777889.1 | outer membrane protein Omp38 | - |
| H7K53_RS15945 (WP4W18E11_31290) | fimT | 3300971..3301486 (+) | 516 | WP_000477151.1 | GspH/FimT family pseudopilin | Machinery gene |
| H7K53_RS15950 (WP4W18E11_31300) | - | 3301595..3302770 (+) | 1176 | WP_182638886.1 | thiolase family protein | - |
| H7K53_RS15955 (WP4W18E11_31310) | - | 3302897..3303340 (+) | 444 | WP_001176580.1 | VOC family protein | - |
| H7K53_RS15960 (WP4W18E11_31320) | - | 3303513..3304481 (+) | 969 | WP_014538385.1 | IS30 family transposase | - |
| H7K53_RS15965 (WP4W18E11_31330) | - | 3304416..3304826 (-) | 411 | WP_182638888.1 | multidrug efflux SMR transporter | - |
| H7K53_RS15970 (WP4W18E11_31340) | - | 3304908..3305393 (-) | 486 | WP_000935248.1 | DUF934 domain-containing protein | - |
Sequence
Protein
Download Length: 171 a.a. Molecular weight: 19606.86 Da Isoelectric Point: 8.8196
>NTDB_id=65739 H7K53_RS15945 WP_000477151.1 3300971..3301486(+) (fimT) [Acinetobacter baumannii strain WP4-W18-ESBL-11]
MFKSPGFTIVELTITLVILVIMSVIAIPLYHQFMASVELKNTPRILTIHIQKAKYDAIIRHKNVVLCPSSDQLVCNTNWD
NRVISFVDNNRNLQHDLNEELLTSIDLNHHYGSMKLQRFGKKQNSIIFQGSSGLPIESNGSFIYCSYDQLKNFKLILSKM
GHVRLEELKNC
MFKSPGFTIVELTITLVILVIMSVIAIPLYHQFMASVELKNTPRILTIHIQKAKYDAIIRHKNVVLCPSSDQLVCNTNWD
NRVISFVDNNRNLQHDLNEELLTSIDLNHHYGSMKLQRFGKKQNSIIFQGSSGLPIESNGSFIYCSYDQLKNFKLILSKM
GHVRLEELKNC
Nucleotide
Download Length: 516 bp
>NTDB_id=65739 H7K53_RS15945 WP_000477151.1 3300971..3301486(+) (fimT) [Acinetobacter baumannii strain WP4-W18-ESBL-11]
ATGTTTAAATCTCCTGGTTTTACTATAGTTGAGCTCACTATAACACTCGTAATTCTTGTGATTATGTCAGTTATAGCCAT
TCCTTTATACCATCAATTTATGGCATCTGTAGAACTAAAAAATACGCCGCGCATACTCACAATTCATATACAAAAAGCCA
AATATGACGCAATTATTAGGCATAAGAATGTTGTTCTTTGTCCAAGTTCTGATCAATTGGTCTGCAATACGAATTGGGAT
AACCGCGTAATCAGCTTTGTAGATAATAACCGTAATCTACAGCATGATTTAAATGAAGAATTATTGACCTCTATAGATCT
TAACCATCACTACGGTTCTATGAAATTACAACGTTTTGGAAAAAAACAAAATAGTATTATTTTTCAAGGTAGTTCTGGAC
TACCCATCGAGTCGAATGGCAGTTTTATCTATTGTTCTTATGACCAGCTTAAAAACTTTAAATTAATTCTTAGCAAAATG
GGCCATGTGCGCTTAGAAGAGCTTAAAAATTGTTAG
ATGTTTAAATCTCCTGGTTTTACTATAGTTGAGCTCACTATAACACTCGTAATTCTTGTGATTATGTCAGTTATAGCCAT
TCCTTTATACCATCAATTTATGGCATCTGTAGAACTAAAAAATACGCCGCGCATACTCACAATTCATATACAAAAAGCCA
AATATGACGCAATTATTAGGCATAAGAATGTTGTTCTTTGTCCAAGTTCTGATCAATTGGTCTGCAATACGAATTGGGAT
AACCGCGTAATCAGCTTTGTAGATAATAACCGTAATCTACAGCATGATTTAAATGAAGAATTATTGACCTCTATAGATCT
TAACCATCACTACGGTTCTATGAAATTACAACGTTTTGGAAAAAAACAAAATAGTATTATTTTTCAAGGTAGTTCTGGAC
TACCCATCGAGTCGAATGGCAGTTTTATCTATTGTTCTTATGACCAGCTTAAAAACTTTAAATTAATTCTTAGCAAAATG
GGCCATGTGCGCTTAGAAGAGCTTAAAAATTGTTAG
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| fimT | Acinetobacter baylyi ADP1 |
43.976 |
97.076 |
0.427 |