Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   MJO52_RS01175 Genome accession   NZ_CP092418
Coordinates   245764..246159 (+) Length   131 a.a.
NCBI ID   WP_020413651.1    Uniprot ID   -
Organism   Microbulbifer variabilis strain SCSIO 43006     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 240764..251159
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MJO52_RS01150 (MJO52_01150) hemC 241336..242253 (-) 918 WP_252084178.1 hydroxymethylbilane synthase -
  MJO52_RS01155 (MJO52_01155) ruvX 242343..242765 (-) 423 WP_252084179.1 Holliday junction resolvase RuvX -
  MJO52_RS01160 (MJO52_01160) - 242825..243409 (-) 585 WP_252084180.1 YqgE/AlgH family protein -
  MJO52_RS01165 (MJO52_01165) - 243445..244353 (-) 909 WP_252084181.1 TonB family protein -
  MJO52_RS01170 (MJO52_01170) gshB 244454..245410 (-) 957 WP_252085942.1 glutathione synthase -
  MJO52_RS01175 (MJO52_01175) pilG 245764..246159 (+) 396 WP_020413651.1 twitching motility response regulator PilG Regulator
  MJO52_RS01180 (MJO52_01180) pilH 246395..246757 (+) 363 WP_252084182.1 twitching motility response regulator PilH -
  MJO52_RS01185 (MJO52_01185) - 246774..247313 (+) 540 WP_252084183.1 chemotaxis protein CheW -
  MJO52_RS01190 (MJO52_01190) - 247474..249615 (+) 2142 WP_252084184.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 14332.55 Da        Isoelectric Point: 7.2147

>NTDB_id=657317 MJO52_RS01175 WP_020413651.1 245764..246159(+) (pilG) [Microbulbifer variabilis strain SCSIO 43006]
MELNWESLTVMVIDDSKTIRRTAETLLQKAGCTVVTATDGFDALAKIADSRPDVIFVDIMMPRLDGYQTCALIKNNSEFR
STPVVMLSSKDGLFDKAKGRVVGCDQYLTKPFSKSELLGAISAHAKPHHAA

Nucleotide


Download         Length: 396 bp        

>NTDB_id=657317 MJO52_RS01175 WP_020413651.1 245764..246159(+) (pilG) [Microbulbifer variabilis strain SCSIO 43006]
ATGGAGCTTAACTGGGAAAGTCTGACTGTAATGGTGATTGACGACAGTAAGACAATTCGCCGCACTGCCGAGACTCTGCT
ACAAAAAGCAGGTTGCACGGTCGTCACTGCTACAGATGGTTTTGATGCGTTGGCGAAAATCGCGGACTCCCGTCCCGATG
TTATTTTTGTCGATATCATGATGCCGCGCCTGGATGGCTATCAGACTTGTGCGCTGATTAAAAACAACAGTGAATTCCGC
TCCACTCCAGTAGTGATGTTGTCGAGTAAAGATGGTTTGTTCGACAAAGCGAAAGGCCGCGTTGTTGGTTGTGATCAATA
TCTGACAAAGCCATTTAGTAAAAGCGAGCTGTTGGGAGCAATTTCCGCTCACGCAAAGCCGCACCACGCAGCCTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(10-121)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

73.387

94.656

0.695
  vicR Streptococcus mutans UA159

41.026

89.313

0.366