Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   MJO57_RS21730 Genome accession   NZ_CP092417
Coordinates   4836274..4836765 (+) Length   163 a.a.
NCBI ID   WP_252018687.1    Uniprot ID   -
Organism   Endozoicomonas sp. SCSIO W0465     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 4827679..4838388 4836274..4836765 within 0


Gene organization within MGE regions


Location: 4827679..4838388
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MJO57_RS21690 (MJO57_21615) - 4827679..4829196 (-) 1518 WP_252017502.1 IS1182 family transposase -
  MJO57_RS21695 (MJO57_21620) - 4829268..4830623 (-) 1356 WP_252018676.1 DNA cytosine methyltransferase -
  MJO57_RS21700 (MJO57_21625) - 4830639..4831187 (-) 549 WP_252018678.1 DUF1367 family protein -
  MJO57_RS21705 (MJO57_21630) - 4831207..4831767 (-) 561 WP_252018680.1 hypothetical protein -
  MJO57_RS21710 (MJO57_21635) - 4831718..4832920 (-) 1203 WP_252018682.1 hypothetical protein -
  MJO57_RS21715 (MJO57_21640) - 4832917..4833234 (-) 318 WP_252018684.1 hypothetical protein -
  MJO57_RS33385 - 4833503..4833694 (+) 192 Protein_4344 helix-turn-helix domain-containing protein -
  MJO57_RS32870 - 4833727..4833855 (-) 129 WP_256491819.1 hypothetical protein -
  MJO57_RS21720 (MJO57_21645) - 4833854..4835368 (+) 1515 WP_252017330.1 IS66 family transposase -
  MJO57_RS21725 (MJO57_21650) - 4835378..4836274 (+) 897 WP_252018686.1 hypothetical protein -
  MJO57_RS21730 (MJO57_21655) ssb 4836274..4836765 (+) 492 WP_252018687.1 single-stranded DNA-binding protein Machinery gene
  MJO57_RS21735 (MJO57_21660) - 4836780..4837115 (+) 336 WP_252018689.1 hypothetical protein -
  MJO57_RS21740 (MJO57_21665) - 4837138..4838388 (+) 1251 WP_252018691.1 hypothetical protein -

Sequence

Protein


Download         Length: 163 a.a.        Molecular weight: 18342.29 Da        Isoelectric Point: 9.1077

>NTDB_id=657299 MJO57_RS21730 WP_252018687.1 4836274..4836765(+) (ssb) [Endozoicomonas sp. SCSIO W0465]
MAASMNRVTLIGRLGKDPDGKATANGNAVTILSIATEESWKKDGQKQTRTEWHRVVLYGKPAELAAQYLAKGHRVMIEGQ
LQTRKWQDQNGQDRYQTEVVYSGYNGKLLFLEKNPNAQQAQPQNYQSQPGTHQSQYANARDGGHAPQPMQTQQYDSYDDS
IPF

Nucleotide


Download         Length: 492 bp        

>NTDB_id=657299 MJO57_RS21730 WP_252018687.1 4836274..4836765(+) (ssb) [Endozoicomonas sp. SCSIO W0465]
ATGGCCGCATCCATGAACCGTGTCACCCTTATTGGCAGACTGGGCAAAGATCCGGACGGCAAAGCCACCGCCAACGGCAA
TGCCGTCACCATTCTCTCCATCGCCACGGAAGAGAGCTGGAAAAAAGATGGCCAGAAACAGACCCGCACCGAATGGCACC
GGGTAGTACTGTACGGCAAACCTGCTGAACTGGCCGCTCAGTATCTGGCCAAAGGCCACAGAGTCATGATCGAAGGTCAA
CTCCAGACCCGTAAATGGCAGGACCAGAATGGTCAGGATCGCTATCAGACCGAAGTCGTGTACAGCGGGTACAACGGCAA
GCTGCTGTTTCTGGAAAAGAACCCCAATGCTCAGCAGGCTCAGCCTCAGAACTATCAGTCACAACCAGGTACGCATCAAA
GCCAGTACGCCAATGCCCGGGATGGCGGTCATGCTCCCCAGCCCATGCAAACACAACAGTATGACTCCTACGACGACTCC
ATCCCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

45.665

100

0.485
  ssb Glaesserella parasuis strain SC1401

42.222

100

0.466