Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   MJO57_RS04860 Genome accession   NZ_CP092417
Coordinates   1133053..1133931 (-) Length   292 a.a.
NCBI ID   WP_252023417.1    Uniprot ID   -
Organism   Endozoicomonas sp. SCSIO W0465     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1128053..1138931
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MJO57_RS04840 (MJO57_04815) - 1128302..1128454 (-) 153 WP_252023412.1 hypothetical protein -
  MJO57_RS04845 (MJO57_04820) - 1128486..1130501 (+) 2016 WP_252023413.1 EAL domain-containing protein -
  MJO57_RS04850 (MJO57_04825) - 1130775..1132397 (+) 1623 WP_252023414.1 NAD+ synthase -
  MJO57_RS04855 (MJO57_04830) coaE 1132427..1133053 (-) 627 WP_252023415.1 dephospho-CoA kinase -
  MJO57_RS04860 (MJO57_04835) pilD 1133053..1133931 (-) 879 WP_252023417.1 A24 family peptidase Machinery gene
  MJO57_RS04865 (MJO57_04840) - 1134467..1134847 (+) 381 WP_252023418.1 CidA/LrgA family protein -
  MJO57_RS04870 (MJO57_04845) - 1134840..1135568 (+) 729 WP_252023420.1 LrgB family protein -
  MJO57_RS04875 (MJO57_04850) - 1135596..1135811 (+) 216 WP_252023422.1 DUF3820 family protein -
  MJO57_RS04880 (MJO57_04855) argC 1135908..1136951 (+) 1044 WP_252023424.1 N-acetyl-gamma-glutamyl-phosphate reductase -
  MJO57_RS04885 (MJO57_04860) - 1137525..1138472 (+) 948 WP_252023426.1 hypothetical protein -

Sequence

Protein


Download         Length: 292 a.a.        Molecular weight: 32487.76 Da        Isoelectric Point: 7.2375

>NTDB_id=657287 MJO57_RS04860 WP_252023417.1 1133053..1133931(-) (pilD) [Endozoicomonas sp. SCSIO W0465]
MSPIIELIESSTPYLTFVLTILGLIVGSFLNVVIHRLPIMMERQWQQQSEAILHPEKEPKPLPAYNLVVPASTCPSCQHK
IRAWENIPVISYLFLRGKCSACKTSISFRYPAIEVLSAVTTVMIGFTYGFTLHTLVFCLFAWSLLALTMIDYDTQLLPDD
ITLPLLWAGLIVNSFGLVVPLEQALWGAIVGYLSLWSVYWVFKLITGKEGMGYGDFKLLAALGAWLGWMKLPLIILLSSL
VGTIAAILLIVTKRQERSNPIPFGPYLAIAGFIALMWGDKLIEAYLSFSGLT

Nucleotide


Download         Length: 879 bp        

>NTDB_id=657287 MJO57_RS04860 WP_252023417.1 1133053..1133931(-) (pilD) [Endozoicomonas sp. SCSIO W0465]
ATGTCACCGATTATAGAACTTATTGAGAGCTCAACGCCTTACCTGACCTTTGTGCTGACAATCCTTGGATTGATTGTCGG
TAGTTTTCTCAATGTAGTGATTCACCGCTTGCCCATTATGATGGAAAGGCAGTGGCAGCAGCAGAGTGAAGCTATTTTGC
ACCCTGAAAAGGAACCCAAACCTCTACCTGCCTACAACCTTGTCGTGCCGGCCTCAACCTGTCCTTCCTGTCAGCATAAA
ATCCGTGCCTGGGAGAACATTCCGGTCATTAGCTATCTATTCCTGAGAGGTAAATGCTCAGCCTGTAAGACCTCAATTTC
GTTCCGTTACCCGGCCATTGAGGTGCTCAGTGCCGTCACGACGGTAATGATTGGTTTTACCTACGGTTTTACCTTACACA
CCCTGGTCTTCTGTCTGTTTGCCTGGTCACTGCTGGCCCTGACCATGATCGACTACGATACACAGCTCCTGCCTGACGAT
ATTACCCTCCCACTGCTCTGGGCAGGCCTGATCGTGAACAGCTTTGGCCTGGTCGTCCCCCTTGAACAGGCTCTATGGGG
AGCCATTGTCGGTTATCTTTCCTTATGGAGTGTTTACTGGGTATTCAAACTGATTACTGGCAAGGAAGGCATGGGCTACG
GCGACTTCAAACTGCTGGCGGCTCTGGGAGCCTGGCTGGGCTGGATGAAGCTGCCTTTGATTATTCTGCTCTCATCACTG
GTTGGCACTATTGCTGCAATACTGTTGATCGTCACCAAACGGCAGGAACGATCCAACCCGATTCCCTTTGGACCTTATCT
GGCCATTGCCGGCTTCATTGCCCTGATGTGGGGCGATAAACTGATTGAGGCTTATCTGAGCTTTTCGGGGTTAACCTGA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(139-246)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(21-126)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

53.069

94.863

0.503
  pilD Vibrio campbellii strain DS40M4

51.625

94.863

0.49
  pilD Acinetobacter baumannii D1279779

49.826

98.288

0.49
  pilD Acinetobacter nosocomialis M2

49.129

98.288

0.483
  pilD Neisseria gonorrhoeae MS11

48.352

93.493

0.452