Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   OG787_RS19950 Genome accession   NZ_CP108243
Coordinates   4619463..4620872 (+) Length   469 a.a.
NCBI ID   WP_405535915.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00075     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4614463..4625872
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG787_RS19935 (OG787_19880) - 4615532..4616476 (-) 945 WP_369034048.1 Ppx/GppA family phosphatase -
  OG787_RS19940 (OG787_19885) - 4616560..4617408 (+) 849 WP_369034049.1 hypothetical protein -
  OG787_RS19945 (OG787_19890) - 4617434..4619221 (-) 1788 WP_405535914.1 BACON domain-containing protein -
  OG787_RS19950 (OG787_19895) radA/sms 4619463..4620872 (+) 1410 WP_405535915.1 DNA repair protein RadA Machinery gene
  OG787_RS19955 (OG787_19900) disA 4620954..4622078 (+) 1125 WP_235475871.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  OG787_RS19960 (OG787_19905) - 4622148..4623005 (-) 858 WP_405535916.1 hypothetical protein -
  OG787_RS19965 (OG787_19910) - 4623605..4624522 (+) 918 WP_369034053.1 A/G-specific adenine glycosylase -
  OG787_RS19970 (OG787_19915) - 4624793..4625335 (+) 543 WP_369034054.1 SigE family RNA polymerase sigma factor -

Sequence

Protein


Download         Length: 469 a.a.        Molecular weight: 49769.93 Da        Isoelectric Point: 8.0022

>NTDB_id=657120 OG787_RS19950 WP_405535915.1 4619463..4620872(+) (radA/sms) [Streptomyces sp. NBC_00075]
MAARTKTAKDRPSYRCTECGWQTVKWLGRCSECQAWGTVEEYGAPAVRTTAPGRVTTSALPIGQVDGRQATARSTGVPEF
DRVLGGGLVPGAVVLLAGEPGVGKSTLLLDVAAKSASDEHRTLYITGEESASQVRLRADRIKAIDDHLYLAAETDLAAVL
GHLDAVKPSLLILDSVQTVASPEIDGAAGGMAQVREVAGALIRASKERGMSTLLVGHVTKDGAIAGPRLLEHLVDVVLSF
EGDRHARLRLVRGVKNRYGTTDEVGCFELHDEGITGLADPSGLFLTRRAEPVPGTCLTVTLEGRRPLVAEVQALTVDSQI
PSPRRTTSGLETSRVSMMLAVLEQRGRISALGKRDIYSATVGGVKLSEPAADLAIALALASAASDTPLPKNLVAIGEVGL
AGEVRRVTGVQRRLAEAHRLGFTHALVPSDPGKIPAGMKVIEVADMGDALRVLPRSRRREAPREEEDRR

Nucleotide


Download         Length: 1410 bp        

>NTDB_id=657120 OG787_RS19950 WP_405535915.1 4619463..4620872(+) (radA/sms) [Streptomyces sp. NBC_00075]
ATGGCTGCCCGTACGAAGACCGCGAAGGACCGACCGTCCTACCGCTGCACCGAGTGTGGCTGGCAGACGGTCAAGTGGCT
CGGCCGCTGCTCCGAGTGCCAGGCGTGGGGGACGGTCGAGGAGTACGGCGCGCCCGCGGTCCGTACGACGGCACCGGGCC
GTGTCACCACTTCCGCGCTCCCCATCGGCCAGGTCGACGGCCGCCAGGCCACCGCCCGCTCCACCGGCGTACCCGAGTTC
GACCGCGTGCTCGGCGGCGGACTGGTCCCGGGGGCCGTGGTCCTGCTGGCCGGTGAACCGGGCGTCGGCAAGTCGACCCT
CCTCCTCGACGTGGCGGCGAAGTCGGCGAGCGACGAGCACCGCACGCTCTACATCACGGGTGAGGAGTCCGCGAGCCAGG
TCCGGCTGCGCGCCGACCGCATCAAGGCGATCGACGACCACCTGTACCTCGCCGCCGAGACGGACCTCGCGGCCGTCCTG
GGCCACCTGGACGCCGTGAAGCCGTCCCTCCTGATCCTCGACTCCGTCCAGACCGTCGCCTCGCCCGAGATCGACGGCGC
CGCGGGCGGTATGGCGCAGGTCCGTGAGGTCGCCGGGGCGCTGATCCGGGCCTCCAAGGAGCGCGGCATGTCCACGCTCC
TGGTGGGCCATGTCACCAAGGACGGCGCGATCGCCGGACCACGCCTCCTGGAGCACCTGGTGGACGTGGTCCTGTCCTTC
GAGGGCGACCGCCACGCGCGCCTGCGTCTCGTCCGGGGCGTCAAGAACCGCTACGGCACGACGGACGAGGTCGGCTGCTT
CGAGCTGCACGACGAGGGCATCACGGGCCTCGCCGACCCGAGCGGCCTGTTCCTGACTCGGCGCGCCGAGCCGGTGCCGG
GCACCTGTCTGACCGTCACCCTGGAGGGCCGCCGCCCGCTCGTGGCCGAGGTCCAGGCGCTGACGGTCGACTCGCAGATC
CCGTCCCCCCGCCGCACGACCTCAGGCCTGGAGACGTCCCGGGTCTCGATGATGCTCGCGGTTCTCGAACAACGGGGCAG
GATCAGCGCGCTCGGAAAGCGGGACATCTATTCGGCCACAGTGGGCGGAGTGAAGCTCTCCGAGCCCGCCGCGGACCTCG
CGATCGCCCTCGCGCTGGCCTCCGCCGCGAGCGACACCCCGTTGCCCAAAAACCTGGTCGCGATCGGCGAAGTGGGCCTC
GCGGGCGAGGTCAGAAGGGTGACGGGGGTCCAGCGCCGACTGGCCGAGGCCCACCGTCTGGGCTTCACCCACGCCCTCGT
TCCGTCGGACCCCGGCAAGATCCCCGCCGGTATGAAGGTCATCGAAGTCGCCGACATGGGGGATGCTCTCCGGGTGCTCC
CGAGGTCGCGTAGGCGAGAGGCCCCACGGGAGGAGGAGGACCGCCGGTAG

Domains

Predicted by InterProScan.

Subunit ChlI of Mg-chelatase (ChlI)

(369-429)

AAA domain (AAA_25)

(84-222)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(14-41)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

43.709

96.588

0.422
  radA Streptococcus mitis SK321

42.826

96.588

0.414
  radA Streptococcus mitis NCTC 12261

42.826

96.588

0.414
  radA Streptococcus pneumoniae Rx1

42.889

95.949

0.412
  radA Streptococcus pneumoniae TIGR4

42.889

95.949

0.412
  radA Streptococcus pneumoniae D39

42.889

95.949

0.412
  radA Streptococcus pneumoniae R6

42.889

95.949

0.412